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Information for unigene UN49783
| FASTA Sequence |
| Unigene ID: UN49783 | Length: 1239 |
SSR | | GCCAGAGTTCCATCCCTACTTCTTCTTCTTCTTCCATTATTGATCCAAAATGGCTGCTGCTATAGGTGCTGCAGTCTCTTTTACAT
CCTCAAAGTCGTCGTCTCTCCACACCAAAAGCTCCTTCGTTTCCCCTCAAAGAATTTTCCTCAACAACAGGAGCACAGTGTGCTAC
AGAGAGGCGTGTATTTATGGGGGAAGAGTGAAGGCTCAGGTGACAACTGAGACGCCAGTGAAAGTAGCCAAGGAGTCAAAGAAACA
GGAAGAAGGAATTGTTGTCAACAAATTCAAACCAAAGGACCCTTACACTGGTAGATGCCTCTTGAACACCAGGATCACTGGCGATG
ATGCTCCCGGTGAAACCCGGCACATCGTCTTCAGCACCGAAGGTGAGGTTCCATACAGAGAAGGGCAGTCGATAGGAGTGATTCCA
GAAGGAATTGACAAGAACGGGAAGCCCCACAAGCTGAGGTTATATTCAATTGCCAGCAGTGCCATTGGTGACTTTGGAGACTCCAA
AACCGTTTCTCTCTGTGTCAAGAGATTGGTTTACACTAACGAAAGTGGAGAGCTCGTTAAGGGAGTATGCTCCAATTTCTTGTGTG
ACTTGAAGCCGGGTGATGAGGCAAAGATCACTGGACCAGTTGGGAAGGAAATGCTTATGCCTAAAGACCCAAATGCCACCATCATC
ATGCTTGGGACAGGAACTGGAATAGCACCATTCAGATCATTTTTGTGGAAAATGTTCTCTGAGGAGCATGAGGACTACAAGTTCAA
CGGTTTGGCATGGCTCTTCTTGGGTGTACCCACAAGCAGCTCATTGCTCTACAAGGAGGAGTTTGAGAAGATGAAGGAGAAGAACC
CGGAAAACTTCAGGTTGGACTTTGCGGTGAGCAGAGAGCAGACGAACGAGAAGGGAGAGAAAATGTACATACAGACAAGAATGGCA
GAGTATGCAGAAGAGCTGTGGGAGTTGCTGAAGAAAGACAACACCTTTGTTTACATGTGTGGTCTCAAGGGTATGGAGAAGGGTAT
CGATGAGATCATGGTCTCACTTGCTGCTAAAGATGGGATCGATTGGTTAGAGTACAAGAAGCAATTGAAGAAGAGTGAGCAGTGGA
ACGTGGAAGTCTACTAAGCTTGCTAGTTGCTAGTGAGAGGTTTATTACTATCTATCTTATTAAAACAGAAACATTCTGTTGGACCT
AATATTTATTTTGTAAGTTTTTAAATTAAATATAC
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002865083 ferredoxin-NADP+ reductase [Arabidopsis lyrata subsp. lyrata] | 1692 | 2e-186 |
| NP_201420 ferredoxin--NADP+ reductase [Arabidopsis thaliana] | 1684 | 2e-185 |
| BAE98556 ferredoxin-NADP+ reductase [Arabidopsis thaliana] | 1681 | 4e-185 |
| CAB52472 ferredoxin-NADP+ reductase [Arabidopsis thaliana] | 1655 | 4e-182 |
| XP_002327750 predicted protein [Populus trichocarpa] | 1602 | 6e-176 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q9FKW6 Ferredoxin--NADP reductase, leaf isozyme 1, chloroplastic | 1684 | 8e-187 |
| P10933 Ferredoxin--NADP reductase, leaf isozyme, chloroplastic | 1561 | 1e-172 |
| P41346 Ferredoxin--NADP reductase, chloroplastic | 1539 | 5e-170 |
| P41343 Ferredoxin--NADP reductase, chloroplastic | 1505 | 4e-166 |
| O04977 Ferredoxin--NADP reductase, leaf-type isozyme, chloroplastic | 1500 | 2e-165 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| A9PJ48 Putative uncharacterized protein | 1602 | 4e-176 |
| B9MXF5 Predicted protein | 1602 | 4e-176 |
| A5BG49 Putative uncharacterized protein | 1572 | 1e-172 |
| B9GZ04 Predicted protein | 1551 | 3e-170 |
| Q9M4D2 Chloroplast ferredoxin-NADP+ oxidoreductase | 1538 | 1e-168 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT5G66190.1 FNR1 (FERREDOXIN-NADP(+)-OXIDOREDUCTASE 1); NADPH dehydrogenase/ electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis/ electron transporter, transferring electrons within the noncyclic electron transp | 1685 | 5e-188 |
| AT1G20020.1 FNR2 (FERREDOXIN-NADP(+)-OXIDOREDUCTASE 2); NADPH dehydrogenase/ oxidoreductase/ poly(U) binding | 1390 | 8e-154 |
| AT1G20020.3 FNR2 (FERREDOXIN-NADP(+)-OXIDOREDUCTASE 2); NADPH dehydrogenase/ oxidoreductase/ poly(U) binding | 1386 | 2e-153 |
| AT5G66190.2 FNR1 (FERREDOXIN-NADP(+)-OXIDOREDUCTASE 1); NADPH dehydrogenase/ electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis/ electron transporter, transferring electrons within the noncyclic electron transp | 1284 | 2e-141 |
| AT1G20020.2 FNR2 (FERREDOXIN-NADP(+)-OXIDOREDUCTASE 2); NADPH dehydrogenase/ oxidoreductase/ poly(U) binding | 967 | 9e-105 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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