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Information for unigene UN49829
| FASTA Sequence |
| Unigene ID: UN49829 | Length: 862 |
SSR | | GAACACATCTTTGAACTTTGCTTACTTGCAGATCTGTCCATTAACTAAGAACAAAGATTGTCTAAAAGAGTCCAGCTTTGCTGATA
ATATTCATTACATAGTCTTTCAAAAGGATGATACATGGTTTACCAATTCTATCAGGAACAGTTTGTTCATGCAATGCAAGGGCCCA
TCGCCTCATTGAAGTTTCAGAGCTTAACTTCCACATCCACACCAGCAGGAAGATCCAGCTGCATCAAGGAGTCGATGGTCTGAGCA
GTCGGGTAGAGAATATCAATCATCCGCTGGTGAGTCCTGATCTCAAAATGGAGCCTTGCATCCTTGTGGACGTGGGGAGACTTGAG
AACACAGTAGATACGCTTCTTGGTTGGCAAGGGAACAGGACCCATCGTCTTGGCATTGGTGTTCCTCGCAGCGTCGAGTATCTGCT
TGCATGAGTCCTCAATGAGAGGCACCCAGTATGATCTTAGCTTGATCCTAATCTTTTGCTTTGGCGCCATCTTATCCGCGTCTACA
CTTATCGAGGAAGAGCTCGGAACCTCGGAAAAGACATCAGAGGCGGGTTCTTCGAGGGTTTCTGGAGTTAGGGTCTCGGGAGCTGC
GAAGACCTTCTTCGTAAACGAGATGGAGGGTTTGTTAAGGACGCAGGAGCCAATGCCGCCATGAGTAGAAGAAGATGGAAGCAGAG
AGACTTTCTGTTTGGTGGAAGAAGAAGAAGAAGAAGATGTAAGGTTGGCGAAAGGGGGTAATATGAACGAAGTTACAGAAGAAACC
GCCATTGAATTTCCGGACAAAGAATCGTTCTTCTTCCTCCTCTTAACGCTTCTTCACAAGGATGTGGTTTGGTTTTCTCTTCCTCC
CC
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| AAW22623 30S ribosomal protein S10-like [Brassica napus] | 892 | 7e-094 |
| ABL97980 30S ribosomal protein S10-like [Brassica rapa] | 858 | 6e-090 |
| ABB97026 unknown [Brassica rapa] | 802 | 2e-083 |
| NP_187919 30S ribosomal protein S10 [Arabidopsis thaliana] | 795 | 1e-082 |
| XP_002884945 hypothetical protein ARALYDRAFT_478688 [Arabidopsis lyrata subsp. lyrata] | 778 | 1e-080 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q9LK61 30S ribosomal protein S10, chloroplastic | 795 | 6e-084 |
| Q9M4Y3 30S ribosomal protein S10, chloroplastic | 592 | 2e-060 |
| P17009 Cyanelle 30S ribosomal protein S10 | 354 | 8e-033 |
| B7K833 30S ribosomal protein S10 | 348 | 4e-032 |
| P51286 30S ribosomal protein S10, chloroplastic | 347 | 5e-032 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q5MD13 30S ribosomal protein S10-like | 892 | 5e-094 |
| A1YMX4 30S ribosomal protein S10-like | 858 | 4e-090 |
| Q2V615 Putative uncharacterized protein | 802 | 1e-083 |
| A5BC08 Putative uncharacterized protein | 607 | 5e-061 |
| B9GFK3 Predicted protein | 586 | 1e-058 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT3G13120.1 30S ribosomal protein S10, chloroplast, putative | 814 | 3e-087 |
| AT3G47370.2 40S ribosomal protein S20 (RPS20B) | 115 | 4e-006 |
| AT3G45030.1 40S ribosomal protein S20 (RPS20A) | 115 | 4e-006 |
| AT3G47370.1 40S ribosomal protein S20 (RPS20B) | 115 | 4e-006 |
| AT3G47370.3 40S ribosomal protein S20 (RPS20B) | 115 | 4e-006 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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