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Information for unigene UN49853
| FASTA Sequence |
| Unigene ID: UN49853 | Length: 1020 |
SSR | | CATAAAGATATTAAATGTTTATTACCATTAAATCAGCACAAACAAATTTAAACCAAGGGACCAAGTTTAAAAAAGAGTGTAGAAAA
GTCCAAACAAGTAGCAGAGATATTTGAGTTAAACAAACACACATTCATCATCCTCACCATACCCAAATGTCATTAGAGGTGAGAGA
GAGAGAGAGAAAAGAGAGAGAGGCCTTTGTCGACTTTAAATTGTCTGCAGCTGAGAGAAGGAGATTCTGATAATTGAACCTCCTAG
AGAGGTCGCATGCTTGCAAACCAGTGCTTCCGCAGCTTCCTCCTCGTTCTCAAACTGCACCAGAGCTTGCTTTTTCCCGTTCATCT
CAAACACTTTGGTGTTCAGTATGGCCCCATGCTCTTGGACGTGGTTCACCACTTCTTCCTCTGTCACGTCTTGCGGAAGAGTGGAC
AAGTGAATCATCTTGGTAGGGGAGCAGCAATAGCGGTAGTTCTTTGCAGCATTGCGGTTGAAGCGGTTCAGGTTCGAGTTAACATA
ATCATGCGAGTCTGTGCCTGGTGTTATATTTGGATGCTTCGAGTAGTTCACCTCTAGCCGCTTACCAAACAGCATCGCTCCCTTGA
GGAAATGAACTGCAAGTTCAGCTTGGAAACCATCTCCCATCTGGACAAGGGCGTGGTCAGGTTTGTTTCGAAGAAGCTTTATCCTC
ACAATGTTCCCGTAAAGAGAAAAGAGATTGAACAGCTTATCCTCATCAACACTATCTGTATTAAGATTGGAGACAAGGATCGTACA
CCTATCATTTGTGCCAGTTATACCCGGAGGCAAGCCACCGCCAAAGGCAGTGATTGCTGAAGAAACATCTTGCATCTGGAGAAGAG
CCTGATTCTTTGCCCTGAGCATCACGAGCTTAGTTATGACACCAAACGGTTGGAAAAGCTGAAGCAAATCATTTTCAGAAATCTCA
TGTCCAACATTACGAACATGAATGACTTTGGATGATTCTGCCATTACCAACCTTGTCTGCGAGAGGTTAGATCC
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| GenBank top hits (Blast detail) | Score | e value |
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| NP_175010 polypyrimidine tract-binding protein 3 [Arabidopsis thaliana] | 1060 | 3e-113 |
| NP_001077673 polypyrimidine tract-binding protein 3 [Arabidopsis thaliana] | 1060 | 3e-113 |
| XP_002893943 predicted protein [Arabidopsis lyrata subsp. lyrata] | 1057 | 7e-113 |
| XP_002524303 polypyrimidine tract binding protein, putative [Ricinus communis] | 969 | 1e-102 |
| XP_002306709 predicted protein [Populus trichocarpa] | 949 | 2e-100 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q6ICX4 Polypyrimidine tract-binding protein homolog 3 | 1060 | 1e-114 |
| P26599 Polypyrimidine tract-binding protein 1 | 340 | 4e-031 |
| Q8WN55 Polypyrimidine tract-binding protein 1 | 330 | 6e-030 |
| Q00438 Polypyrimidine tract-binding protein 1 | 328 | 1e-029 |
| Q29099 Polypyrimidine tract-binding protein 1 | 325 | 2e-029 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| A8MR27 Uncharacterized protein At1g43190.3 | 1060 | 2e-113 |
| Q0WQH0 Putative uncharacterized protein At1g43190 | 1060 | 2e-113 |
| B9SE84 Polypyrimidine tract binding protein, putative | 969 | 8e-103 |
| B9H7U5 Predicted protein | 949 | 2e-100 |
| B9GT89 Predicted protein | 946 | 4e-100 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT1G43190.1 polypyrimidine tract-binding protein, putative / heterogeneous nuclear ribonucleoprotein, putative | 1061 | 9e-116 |
| AT1G43190.2 polypyrimidine tract-binding protein, putative / heterogeneous nuclear ribonucleoprotein, putative | 1061 | 9e-116 |
| AT1G43190.3 polypyrimidine tract-binding protein, putative / heterogeneous nuclear ribonucleoprotein, putative | 1061 | 9e-116 |
| AT5G53180.1 PTB2 (POLYPYRIMIDINE TRACT-BINDING PROTEIN 2); RNA binding / nucleic acid binding / nucleotide binding | 116 | 4e-006 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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