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Information for unigene UN49875
| FASTA Sequence |
| Unigene ID: UN49875 | Length: 1024 |
SSR | | GGAACATAATAATTTTGTATATAGGAAACGGTAGACTAGTCATACTTGCAAGATTTGTACTGTCGAAATATTTTAGTAACACTTAA
CAAAAGCTGAGACACGAAAAAGTTCAAAAATGTGTAACAACAAGTTAGATCTCTGGTACATAAAATCTATGCTCGTCTCCTCCATT
AACTAACAACAGAGTAGACTGGTAAACTTTCCAGCAGATATTGTATCCAGGCACCAAACTGCATCGGTAGGGTTTCCGAGCATCGA
AAATCCAGAGATTAAGCTGGCGACTGGAGCTTTTTGTTGTTTTTCCAGCTTAGGAAATAATAATAGAAGAAGTCGGCATAGAGCAA
TGTCTGAACAAACCCCGCGATCCATGTTATCCAGTGAACAAAGTGAGGCTCAGTGAAGTAACGGTAGATCCAGTTTAGGATGTACA
ATCCCCTGTACCCCCCAAGGAGGAATATGTATTGCCCGGTCAAGTTGTCGATATTTCTAGTCCTTTGAAGCAAGACAAGCTGAGGT
AATATAGCAACAGCCTCCAAGTACAACGAAAACGTCCACAGTACCTCAAGAAAGGTGAACTTTTCGTGAATGAGAAGAGCTAAGAG
AAGGCAGGGAAGGACAAGGAACCAATGGCGAAAGGTATCTTGCTCTCTGTCGTAAGTCCTTTGGACGGCCTTGTGATACCTCATGT
ACCAAACAATGGAGAAGGAGCTTCCTAAGAAGACCAACTTCATGAAGGTGTTGTAGACGGAGACAAAGCTCGTGAATATATCCAAA
TAACGCGTCGCGAATACAATGGCGTAGAGCTCTTGAGTCTTCAATGACACACCAGCGCAGGATTTGATGGTGTGGATCTTGAGGAG
CAAGACGAGGACACTGGCCAGGTGAGTCATATCACCTGCTAATCTGAAAATGTTCATCTTCTTCTTCTTCTTCGATTGATCGGTGC
TGAATCTAATCCTCTCCTTCGTCTTCCTTCTTCTAGGGTTCAGTGAAGCTCCCTTTCTTGCTTATTTTCGTCTCCTCC
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002883569 hypothetical protein ARALYDRAFT_480012 [Arabidopsis lyrata subsp. lyrata] | 1117 | 8e-120 |
| AAM64352 ER lumen retaining receptor (HDEL receptor), putative [Arabidopsis thaliana] | 1110 | 5e-119 |
| NP_566758 ER lumen protein retaining receptor [Arabidopsis thaliana] | 1102 | 4e-118 |
| XP_002863780 predicted protein [Arabidopsis lyrata subsp. lyrata] | 1084 | 5e-116 |
| XP_002863175 hypothetical protein ARALYDRAFT_333020 [Arabidopsis lyrata subsp. lyrata] | 1074 | 7e-115 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q9ZTN2 ER lumen protein retaining receptor | 1009 | 1e-108 |
| P35402 ER lumen protein retaining receptor | 825 | 2e-087 |
| O76767 ER lumen protein retaining receptor | 586 | 1e-059 |
| Q5XHA2 ER lumen protein retaining receptor 1 | 579 | 8e-059 |
| Q611C8 ER lumen protein retaining receptor | 565 | 3e-057 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q8LD09 ER lumen protein retaining receptor | 1110 | 3e-119 |
| Q8VWI1 ER lumen protein retaining receptor | 1102 | 3e-118 |
| C6TCM4 ER lumen protein retaining receptor | 1032 | 4e-110 |
| C6T4N9 ER lumen protein retaining receptor | 1031 | 5e-110 |
| A9P883 ER lumen protein retaining receptor | 998 | 3e-106 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT3G25040.1 ER lumen protein retaining receptor, putative / HDEL receptor, putative | 1103 | 1e-120 |
| AT1G29330.1 ERD2 (ENDOPLASMIC RETICULUM RETENTION DEFECTIVE 2); KDEL sequence binding / receptor | 826 | 2e-088 |
| AT2G21190.1 ER lumen protein retaining receptor family protein | 271 | 4e-024 |
| AT1G19970.1 ER lumen protein retaining receptor family protein | 270 | 5e-024 |
| AT4G38790.1 ER lumen protein retaining receptor family protein | 255 | 3e-022 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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