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Information for unigene UN49889
| FASTA Sequence |
| Unigene ID: UN49889 | Length: 1153 |
SSR | | GATATTTTACTTGAAAACATTAAGAACAAAAAGAAAATAACACCAGTCCTTGATGAGACATTACGATCTTAAGACACAGCAATCGA
TTTATTCAAACACCCTTTAGTGTCTGCGAAATCCAAGTCATCAAAAAAGTACACAAGAGCGAGCAAAACATGTGCTTTTTCCTCTC
CTCCACCTCTCTCTGTCACACATATTTTCACCTCAAATATGATATGATGATCCTTAATCGTTTGGCTCACGAATCTGGATCGATGC
TTTCGACAAGCTTGCTTCCAGTTCATCAAGCTCATCCATGTCCAAATCATCATCATCATCATCATCTTCGTCCTCTTCTTTCGAAC
TCTGTTCAGCATCACCACTGCTCCTGCTTGTCCCAGGGGCCTCTGTTTCTTTGTCCTTTGCCTTCTGTTCAGTCTCTTCCTCTTCC
TTTTCCCTCTGGTACTCTTCAAAAGCCTCAGCATCATCCACAAACAAGCTTGCATTCGACAGAAACAGCTCCCGACCACTCATACG
GTCGTTCTTGGCTCTCTCGGCTTGAGAAGCAGCCAAACCTGCGTCTCTCTCAGCTATTTTCTTCCTCTTCCATTCCATAAATAGCG
CCGGTGTCATTTGTGTTGCCGTTTTCAGTTTCGCACGCTCGTTCTCGATTTCTTCTTCAACTGGCATCTTTTGTGACTCTTCTTCC
AAGAGAGCCTCCATCTGAGACTTGAGGATATATCCAGGAGGAAGAGCGTGTCTGTAATGACACTCTTTCCCACCATTGGGGCAAGC
CCAGAACCACCCATACTGTTTCTTTTCCACCGCGTACAGAAAATACTTGCAAACAATATCAGTTGGTTTGTTCTGGTTATATTCAT
TTTTCTTTGATTCCACAACCTTCTCAAGGGTCTCCTGATCCCACTCCTCCATATCTCCATCTTCATCACGCTTGTCGCTGTAAATG
TCAATCTTCTCACCTTTCCTTTGAATGTTCAGATCATGAGAGAACTTACACTTAAATCCCTTTTGACACTGCCCTGCCTTGAAAAA
CTCACACAGGATGGACTTCGGATCCACACCAACAGGAACTTTGGGCTGACTAATGGCAACCTTAAACAACTCATTCAACTCTTGTT
CTCTCGCTTTCTCTTCCTCTTTCTTTTTCTTGGCC
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| GenBank top hits (Blast detail) | Score | e value |
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| NP_179618 zinc finger CCCH domain-containing protein 21 [Arabidopsis thaliana] | 1485 | 2e-162 |
| XP_002883934 zinc finger (CCCH-type) family protein [Arabidopsis lyrata subsp. lyrata] | 1480 | 7e-162 |
| XP_002525195 zinc finger protein, putative [Ricinus communis] | 1254 | 1e-135 |
| XP_002312050 predicted protein [Populus trichocarpa] | 1237 | 1e-133 |
| XP_002326328 predicted protein [Populus trichocarpa] | 1233 | 3e-133 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q9SK74 Zinc finger CCCH domain-containing protein 21 | 1485 | 8e-164 |
| Q0JHZ2 Zinc finger CCCH domain-containing protein 11 | 1205 | 2e-131 |
| Q54DA5 Zinc finger CCCH domain-containing protein 15 homolog | 658 | 7e-068 |
| Q5H7N8 Zinc finger CCCH domain-containing protein 15 | 575 | 3e-058 |
| Q6DD06 Zinc finger CCCH domain-containing protein 15 | 553 | 1e-055 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| B9SGS6 Zinc finger protein, putative | 1254 | 8e-136 |
| B9HM02 Predicted protein | 1237 | 8e-134 |
| B9MT73 Predicted protein | 1233 | 2e-133 |
| C5XP17 Putative uncharacterized protein Sb03g039020 | 1222 | 4e-132 |
| B6TD33 Nucleic acid binding protein | 1216 | 2e-131 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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