Library    |     Search    |     Batch query    |     SNP    |     SSR  

Information for unigene UN49918

FASTA Sequence
Unigene ID: UN49918Length: 1097 SSR 
GGAAAAACTAATTACTTTATTCTGAGTTGGTTTTGGAGGAGAATATCTCCCATTTTGAAAAGATGATGGCTCTTAAGAATCACAGA
GATTTTCTCGTGAATCATCGACCCATTTTTTTTTGGTACAACAATATCTAATATCTCCCATTTTTTTCCTTCTGCTAAGCACCTGA
TTCCTCATCTTTGCATCAAATTTAGTCTCGTCTCCACCATCATCATCATCATCACTATGTCCAACTGATACAGGCCAGCTTTTCTC
TTTTTGAGCATCTTCCTTCCTAGAACCGAGAGCTTCCCGCACAGATAGCACCTCCTCCAAGTCAGATGCATTCCGTTCTTTATTTG
TAGATTCTGGCTTCAATAGTTGAGGATCGTTCAACACGTCATGACTGCTCTTAATCTTTTGCTTTACAGCTGCCAGTTCCTTCTCC
TCTTCCTCAGCTTCTTCTCCGAATGACAGTAGATTCAATTTCTTCACAGGCTTTTTTGGGGGATTCCTTGACTTCATCAACAGGAG
CATGTGATGTCTTTGCTAACACTCTAGGAACAATATCTTCGAAAGGGTTCCACGAAACCTCAACAGATAATATTTTGGGGGCAGGA
TCCAGGGGACGATCATCTTTACCAATGTCAACCTCTCCTAGTCTTAGAAGATTAAAGATTAAATCACCCGTTACCTTTCCAAAGAT
ATTGTGCTTCTTATCAAGCCAATCACACTTATCCAAAGTGAAAAAACTGGCTACCATTAGTATTCGGTGAGCTCTCATTAGCCATG
GCCACAGTCCCCCAGTGGTTAAATCTCAGTGTCGAACGGAACTCATCGGCAAAGACACCTCCGTATATATTCTCTCCACCTGTGCC
GGAGCGGGCGGGATCGAGGAACCCGGGGATTACACGGTGGAAGATGGTGTCGTCGAAGTAACCCTCGAGGCGAAGTTGAACGAAGT
TCCGAACGGATTTGGGGGCTTCCTTAGGCCATAGCTCGATGTCGATTGGGCCATGAGTTACAAAGTGTAAAGACGAAGAGATCACA
AATGCCTACCGTTGCAGTAATTGGATCGTCCCCATTCGCCGATCGAAGAGAAACGATGACGACGG

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
XP_002869225 peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein [Arabidopsis lyrata subsp. lyrata]4977e-048
CAA21215 putative protein [Arabidopsis thaliana]4833e-046
NP_195032 peptidyl-prolyl cis-trans isomerase SDCCAG10 [Arabidopsis thaliana]4833e-046
BAE99301 cyclophilin [Arabidopsis thaliana]3982e-036
BAK61819 peptidyl-prolyl cis-trans isomerase [Citrus unshiu]3793e-034

Swiss-Prot top hits (Blast detail)Scoree value
Q3TKY6 Peptidyl-prolyl cis-trans isomerase CWC27 homolog3163e-028
Q5XIB2 Peptidyl-prolyl cis-trans isomerase CWC27 homolog3154e-028
Q17QX9 Peptidyl-prolyl cis-trans isomerase CWC27 homolog3136e-028
Q6GLX7 Peptidyl-prolyl cis-trans isomerase CWC27 homolog3082e-027
Q6UX04 Peptidyl-prolyl cis-trans isomerase CWC27 homolog3073e-027

TrEMBL top hits (Blast detail)Scoree value
O82646 Putative uncharacterized protein AT4g330604832e-046
Q6Q152 At4g330604832e-046
Q0WU97 Peptidyl-prolyl cis-trans isomerase3981e-036
B9RQS7 Peptidyl-prolyl cis-trans isomerase, putative3721e-033
B9IND9 Peptidyl-prolyl cis-trans isomerase (Fragment)3595e-032

Arabidopsis top hits (Blast detail)Scoree value
AT4G33060.1 peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein4831e-048
AT3G44600.1 CYP71 (CYCLOPHILIN71); chromatin binding / histone binding / peptidyl-prolyl cis-trans isomerase2293e-019
AT1G01940.1 peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein2203e-018
AT4G34870.1 ROC5 (ROTAMASE CYCLOPHILIN 5); peptidyl-prolyl cis-trans isomerase1504e-010
AT3G63400.1 peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein1381e-008

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
82  100%

Unigene MembersMember information