 |
Information for unigene UN49922
| FASTA Sequence |
| Unigene ID: UN49922 | Length: 877 |
SSR | | CTAAAACTGAATCCTGAAATTTAAAATGATAATGTGGAGGTTTGATCCTGAAGCCAAAGGTCTCAAAGAAGATTAAAGAAAAATCT
AAAGGATTCAAAACAAGGTCTCAGCAAAAATCCAACAAAAGTAAACAGTTTCATCATCATGAAGCTTCCCCTCCTTATTCTTGCTT
GGAGGCAAGAGCAGCAGCTTGACCTCTGAGACGACCAGTCCTCCTTGCAGCAATAAGACCAACCTTTTGCCCGGGTGGTGCATCAC
GACGGACGGTACTGGCGTGACCGATATGTTGATGGTTACCTCCTCCGTGAGGATGCTCAACAGGATTCATAGCCACACCACGAACC
TTAGGCCAGCAGTTCCTCTTCACACGGTACTTGTGGTAGGCGTTACCTGCCTTGAGCATGGGCTTCTCAGTTCTTCCACCACCAGC
AACTTGACCAATCATGGCCCTGCATCCACTTGGGACAATCTTCTTGGATCCAGATGGCAACTTAACCCTTGTCGTGTCGTTGTCAG
GGTTGTGTGAAATAACGATAGCGTAATCTCCAGAAGCTCTAGCGAGCACACCACGATCACCGACATGATGCTCGACGTTGCAGACA
ACAGCTCCCTCAGGGATAGATCTGAGAGGCAGGACATTTCCGACAACGAGAGTCGCCTTCTTACCGCAGTACAAGAACTGTCCGGT
GTACATACCTTCGGCGGCGACGAAGAGCTCCTTCTGCTTCTTGTAACGGAAAGGATCGTGGCTCCTGAACTTGGCGGGGCCCTTGC
GGTGGTGAGTGTGGGACTTGAAGACGGAGCCTGCTCCCTTACGTTGAGCTCTGATGACACGACCCATGGATTCGTCTTCTTCTTCT
TCTTGAGTTTACGGCCC
|
|
|
| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002869043 60S ribosomal protein L8 [Arabidopsis lyrata subsp. lyrata] | 1002 | 1e-106 |
| NP_195336 60S ribosomal protein L8-3 [Arabidopsis thaliana] | 997 | 5e-106 |
| XP_002884102 predicted protein [Arabidopsis lyrata subsp. lyrata] | 991 | 2e-105 |
| XP_002327761 predicted protein [Populus trichocarpa] | 988 | 5e-105 |
| NP_179393 60S ribosomal protein L8-1 [Arabidopsis thaliana] | 986 | 9e-105 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q42064 60S ribosomal protein L8-3 | 997 | 2e-107 |
| P46286 60S ribosomal protein L8-1 | 986 | 4e-106 |
| P29766 60S ribosomal protein L8 | 966 | 9e-104 |
| P25998 60S ribosomal protein L8 | 943 | 4e-101 |
| Q4PSL7 60S ribosomal protein L8-2 | 881 | 6e-094 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| A9PCT0 Predicted protein | 988 | 4e-105 |
| A9PBZ5 Predicted protein | 984 | 1e-104 |
| C6TDL5 Putative uncharacterized protein | 978 | 5e-104 |
| B9SK07 60S ribosomal protein L8, putative | 975 | 1e-103 |
| B9RPL9 60S ribosomal protein L8, putative | 972 | 3e-103 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT4G36130.1 60S ribosomal protein L8 (RPL8C) | 998 | 2e-108 |
| AT2G18020.1 EMB2296 (embryo defective 2296); structural constituent of ribosome | 987 | 3e-107 |
| AT3G51190.1 structural constituent of ribosome | 883 | 3e-095 |
| ATCG00830.1 encodes a chloroplast ribosomal protein L2, a constituent of the large subunit of the ribosomal complex | 236 | 3e-020 |
| ATCG01310.1 encodes a chloroplast ribosomal protein L2, a constituent of the large subunit of the ribosomal complex | 236 | 3e-020 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
|
|
|
|
