RadishBase

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Information for unigene UN49941

FASTA Sequence

Unigene ID: UN49941	Length: 1069	SSR
TTCTAAACAAAACCAAACATCGGTTTAGACACTTAAAACCCGCCTCAACCGGTCCTTACACGAGCTCGGATACACAATCACAGAAT CCACACACAACCCTCCTTTGGCATGTGTACAATCGATCTGCGTCATGGAGAACTTAAGCTTAGTCATCGACGAACCTTTAGATTTT CCAACCACAAAGTCTCCGGCATGGTAGTGATTCCAGCTTCCCGATCCGGTTAACATGCATTGAGATGAAGAGTGCTGACCATCTTC AGTCCAAATCTGAAACCGAACCGGTTTAATGTTCCAACCGTGAATCTGTTCAGTGTTGCAAACTTTCCAACCAAACCGCTTTCCCA GTTTGCCCCGGTGAAGCGTGAGGAAGACGCTGTAGGTTCCAGCTGGGAACGGGAAATCGATTTCTCCATCGACTTGAAACCACCAG ATTTGCTGAAGATATGCCACCGAACCAAATCGAGACTCATCAGAGGGAACGTGATTCCAGTATCTCCGATCATCAATCCCTGTGAT CGACAATCCCTTAGCGGATATGTATAAACAGAGATCACTGGTTCGTTTATCCACCCAAGCTTTCTTTGTGCCTTGGTCGAAGGAAT TAACACGAGAGAGGAAGTTATAGACGTCTCTTTTGCGCAGCTTTTCCGGGAAACCCCCGAGGATTTTCTCGAGAATCAACCTGTAG TCTCGAGGGAGCTTCGATTCCCAGACGAAATCAGCCCAGGAAGCGCTGTGGAAAGCTCTGTTTAGCTTCGAGAATCTGCAGATCCC GACCGGATCCAAGCTTTCGAGGATCAACGCCACGCAGCTCTCAGGCAAATCACCCAAACCGGGCTTTGACAGATCTCTCTCACGAG AGGAAGAAGAGTTTGGACCATTGGTGAAGAGAGAGAACCCAGAACCCATTCAATCCTTGAGAGAAGATGAATCAAAGAATTAAAAA AAACTAAAAAAAATCGTAAGAAATTTCGAGACTTTCGTTGTGGTTTTTTTCAAATAAAAACAAATGGAGAGAGAGAGAGAGGAAGA GTTTGGTGGTTTCAGACAAATGGTGCAAGCGAAGCTC

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
XP_002886433 phloem protein 2-A11 [Arabidopsis lyrata subsp. lyrata]	1271	1e-137
NP_176497 F-box protein PP2-A11 [Arabidopsis thaliana]	1257	5e-136
NP_172731 F-box protein PP2-A12 [Arabidopsis thaliana]	1156	2e-124
XP_002892710 phloem protein 2-A12 [Arabidopsis lyrata subsp. lyrata]	1153	5e-124
XP_002298062 f-box family protein [Populus trichocarpa]	1003	1e-106

Swiss-Prot top hits (Blast detail)	Score	e value
Q9CAN4 F-box protein PP2-A11	1260	9e-138
Q9LN77 F-box protein PP2-A12	1156	1e-125
Q9LEX0 F-box protein PP2-A13	825	3e-087
Q9FJ80 F-box protein PP2-A14	692	7e-072
Q9LF92 F-box protein PP2-A15	564	5e-057

TrEMBL top hits (Blast detail)	Score	e value
B9GKN4 F-box family protein	1003	9e-107
B9GW68 F-box family protein	994	1e-105
B9RC28 ATPP2-A13, putative	991	2e-105
B9IC61 F-box family protein	887	3e-093
B9ID33 F-box family protein	872	1e-091

Arabidopsis top hits (Blast detail)	Score	e value
AT1G63090.1 AtPP2-A11 (Phloem protein 2-A11); carbohydrate binding	1260	8e-139
AT1G12710.1 AtPP2-A12 (Phloem protein 2-A12); carbohydrate binding	1156	9e-127
AT3G61060.1 AtPP2-A13 (Arabidopsis thaliana phloem protein 2-A13); carbohydrate binding	825	2e-088
AT3G61060.2 AtPP2-A13 (Arabidopsis thaliana phloem protein 2-A13); carbohydrate binding	813	6e-087
AT5G52120.1 AtPP2-A14 (Phloem protein 2-A14); carbohydrate binding	692	6e-073

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


6	2			100%

Unigene Members	Member information