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Information for unigene UN50022

FASTA Sequence
Unigene ID: UN50022Length: 922 SSR 
AAACCAAATGTTCTGTTATTATTAAGAGAAATAAAGATTGTAACTTTAAGAATTACAAAAGTCAAGAGTAGACAAAGCCCTCCATA
ATCATGGGAGACATAATCAGAGTTCCAGACCATTTATATATACCAAAGATATATTCTTAAAAGCCCAGAATCACAGAGATGCATTA
CATACAGATTCCTTTTTTTCTTTCTTTTAAGTGGTTTTAGCCAAGGTTGCAAATCTTTCAAGTCCACCTCTAAGCAAGGTCTCTAA
AAAGGGCCGGAGCGCGGATGCCACAGGGGTCAAAAGCGCAGGGACTTAATATGATACAGTTAGCTCAACGAGGCAAGATGAAGGAC
CTTTAGGGAAGAACCTAACACTGCCTTTATTAGGAAGACCTTCAAGAGATCTCCAATGGATTTTCTGATTAGGAGTAGGCTGAAGA
TTGCGAGCAAGCCAAGAATACTTAATGTCTTGGCCAAAAGCATTGTACTTGAGTGACCAACGTGATAGATCAGGCTTGTCCTTTAA
CACCTCAACGGATGAAATGAAAGGCATCCACTTAGGGAAAGATTCACGATCCAAGTAGAAGTTATACGCTACTGACACTGGTATAT
CTACTTCCATCTTCACTGTGCAGTCTTGCCACTCCATGGAAACAGAGAAGCGTTTGTTGCGAGTGTTGAGTCTCGATCTTCGAGTG
ACGGTAGACGAAGGAGAGCGAGAGGATGAGGAGGAGGAGGAGGAGCCATTTAGGGGAAGCAACTGAGGAAACGATTTGGGTTTACG
ATGAAAAGGTTGAGGAGCCAATCTGTGATTGGAGCAGATGAGATTGGATGTTTTACAGGTTGTCGACAAATGATTGATCGCGTTCA
TGTGAGTTGCTGCTGTTACAGACATTGGAATCTTTTTCTCTGTTTTTTTTTTTTTGCCTCTT

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
NP_563656 SRPBCC ligand-binding domain-containing protein [Arabidopsis thaliana]8076e-084
XP_002892111 hypothetical protein ARALYDRAFT_311357 [Arabidopsis lyrata subsp. lyrata]7897e-082
ACJ84143 unknown [Medicago truncatula]6642e-067
XP_002302795 predicted protein [Populus trichocarpa]6615e-067
ACU23407 unknown [Glycine max]6509e-066

Swiss-Prot top hits Scoree value
No hits found  

TrEMBL top hits (Blast detail)Scoree value
Q94K52 Putative uncharacterized protein At1g024758074e-084
B7FHB4 Putative uncharacterized protein6641e-067
B9GSY3 Predicted protein6613e-067
C6TKG7 Putative uncharacterized protein6506e-066
B9I9D9 Predicted protein6471e-065

Arabidopsis top hits (Blast detail)Scoree value
AT1G02475.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Streptomyces cyclase/dehydrase (InterPro:IPR005031); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G01883.1); Has 350 Blast hits to 350 proteins in 105 species: Archae - 0; Bacteria - 211; Metazoa - 0; Fungi - 0; Plants - 29; Viruses - 0; Other Eukaryotes - 110 (source: NCBI BLink).8602e-092
AT4G01883.1 LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Streptomyces cyclase/dehydrase (InterPro:IPR005031); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G02475.1); Has 320 Blast hits to 320 proteins in 96 species: Archae - 0; Bacteria - 186; Metazoa - 0; Fungi - 0; Plants - 29; Viruses - 0; Other Eukaryotes - 105 (source: NCBI BLink).5877e-061
AT1G02470.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Streptomyces cyclase/dehydrase (InterPro:IPR005031); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G02475.1); Has 276 Blast hits to 276 proteins in 86 species: Archae - 0; Bacteria - 162; Metazoa - 0; Fungi - 0; Plants - 29; Viruses - 0; Other Eukaryotes - 85 (source: NCBI BLink).5528e-057
AT1G02470.2 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Streptomyces cyclase/dehydrase (InterPro:IPR005031); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G02475.1); Has 273 Blast hits to 273 proteins in 85 species: Archae - 0; Bacteria - 160; Metazoa - 0; Fungi - 0; Plants - 29; Viruses - 0; Other Eukaryotes - 84 (source: NCBI BLink).5402e-055

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
122  100%

Unigene MembersMember information