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Information for unigene UN50033
| FASTA Sequence |
| Unigene ID: UN50033 | Length: 1295 |
SSR | | GCTTAAATAAAATATATTGTCGTCAACCTTGACTTTATCAGATGGAGATTCATAGGAACATAAGACTTCATACAAATATTAAAAAG
AAAAAAAGAAAAAATAAACTGAGAATGATCTTAAGAATCATTACATGACGAGATGAATCTTTTTAACAAGCCAGAGTAAAGGAGTT
TCTTGAGAACACAGAGAGTTCACAACTAGAGAAACAAAGAAACACCATAGAGCGAGAGTTGCACAAAGTTTTGTTCTGAGAAAGAG
AATCTTTCTTCAACACAAGTTTCATCTTGGAGACGCTTCCACAGATCTGGACCTGGATCCTGATGGAGACCTTGAAACCTCTCTTC
CACCACGACGCCTTTCCTCTGGTTCATAGTCCGGTTTCCTGGTAAAAAAAAAAAGGACCAATCAATGTCCCAAACAAGAAAATCAG
ACACAGTCAATCCCCAAGAGCAATAACAAAATAAGCTCACTCTCTAGTCTCATTGTCTCCATTTGTGTCTCGGTCTTCAGCAGCAG
TAGCAGCACCTTCATAGCCAGGGGAATAGGACCTGCGACTGTACTTTGCATCTCCTTCTCCTCGAGGAGGACTTCTTAGTGGTGAT
CGTGGACGTTCCTCTTGTCTTCTCCTTGGTGATGCTGAATAGTCTGCTCCTCTTCTTCTAGGTGCAGGTGAGTAAGACCTTGATCG
GCGTCTGCTTCTAGAATCCGATGGACGACGGGGAGAGCGTGATCTAGAGATTGAACGTGAACGAGACCGTCCATGAGAACGACCTC
TAGAGCCAGAAGGTTCCCTGCTACGAGTCCTAGTCTTCACACGCATCTCCTCAGGTCTTTTCCTGGACTCTGAAGCAACAACCACG
GTTATCTCTCTTCCACCAAATACTCTTCTGTTCATGCTTCTTTGAGCCTCCCCAGCATCATATGCATCGACAAACTCCACAAAAGC
AAACCCCCGAGGTTCCCCTGAGTAATAGTCTCTGGGGATATAGACATCCCTCACAGGACCAAACCTCTCAAAGGGAACACGAAGCT
CTTCTGGTCTGCAATCGAGAGGAACGTTTCGAACCAAGAGACTTCCATGGCTAGATCCCTTACGTCCACCACCACCACCACCACCA
CCGTATCCACGTCGCGGAGGAGGAGGAGGGCTTCTGCCACGACCACCGTATCCTCTCCTCGGAGGACTGTAATAAGGCGGACTGTA
TCTCCTACTCATCACTGCGACGACGGAGTAATTGAGAAGACGGACAGATCTGAAGTGAACCCCTAAAGCTCTTCTCTTTACAGAGA
GACCC
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002876304 hypothetical protein ARALYDRAFT_485973 [Arabidopsis lyrata subsp. lyrata] | 989 | 7e-105 |
| NP_567021 SC35-like splicing factor 30 [Arabidopsis thaliana] | 957 | 4e-101 |
| CAC03602 SC35-like splicing factor SCL30, 30 kD [Arabidopsis thaliana] | 948 | 4e-100 |
| CAB75904 putative RNA binding protein [Arabidopsis thaliana] | 928 | 9e-098 |
| XP_002533150 serine/arginine rich splicing factor, putative [Ricinus communis] | 772 | 1e-079 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| P30352 Splicing factor, arginine/serine-rich 2 | 287 | 8e-025 |
| Q06A98 Splicing factor, arginine/serine-rich 2 | 285 | 1e-024 |
| Q3MHR5 Splicing factor, arginine/serine-rich 2 | 284 | 2e-024 |
| Q01130 Splicing factor, arginine/serine-rich 2 | 284 | 2e-024 |
| Q62093 Splicing factor, arginine/serine-rich 2 | 284 | 2e-024 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q8L3X8 Putative RNA binding protein | 957 | 3e-101 |
| Q9FYA9 SC35-like splicing factor SCL30, 30 kD | 948 | 3e-100 |
| Q9M2T3 Putative RNA binding protein | 928 | 6e-098 |
| B9T4I1 Serine/arginine rich splicing factor, putative | 772 | 7e-080 |
| C5Y8K9 Putative uncharacterized protein Sb05g027700 | 712 | 7e-073 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT3G55460.1 SCL30; RNA binding / nucleic acid binding / nucleotide binding | 957 | 1e-103 |
| AT3G13570.1 SCL30a; RNA binding / nucleic acid binding / nucleotide binding | 450 | 9e-045 |
| AT1G55310.2 SR33; RNA binding / protein binding | 430 | 2e-042 |
| AT1G55310.1 SR33; RNA binding / protein binding | 428 | 3e-042 |
| AT5G18810.1 SCL28; RNA binding / nucleic acid binding / nucleotide binding | 391 | 6e-038 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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