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Information for unigene UN50048
| FASTA Sequence |
| Unigene ID: UN50048 | Length: 1120 |
SSR | | GGAGTCTCTGTAAACCCTAAACCCAATTCGAGCTCTCCGATGGCGAGCCTTCGATGCCTTCGCGAGCTAAGCCGCCGCGCCACGAC
GGTCCTATCAATCAACCAGACGCGATTGATCTCTTCACTTCGAAGCTTAGAGCCTTTCGGTACCAGCATTACTCATGGAACCCCAA
TTCCGAATCGATCTCTCACTAGAGATCTCCCGAGGTACACTCGCTCCCGAGGTCGCCTCTTGTCTACGAAAACAAACGATACTGAT
GAAAGCAGCGAAGGAGAAGATGATGATGATGATGAGGAGTACGAGGATTCGGCGGAGATGGAAGTAGAAAGGGAGTATTCGCCGGC
CGAGAAAGTGGAAGCAGCGGCGGAGATAGGGTACAAGGTGATGGGTCCTCTCAAACCTTCGGAGAGACTATTCAAACCCTATGAGC
CAGTGTTCGCCGTTGTTCAGATTGGCTCGCATCAGTTCAAAGTAAGCAATGGAGACTCCATCTTCACGGAGAAGTTGAAGTTCTGT
GACATCAATGATAAGTTGGTACTGACTAAGGTGCTTCTACTGGGCTCGGCGAGCCAGACGATTATTGGTAGGCCTATCTTGCCTGA
TGCTACTGTTCATGCTGTTGTGGAAGAGCATGCATTGGATGAAAAAGTGCTCATTTTCAAAAAGAAACGAAGGAAGAATTATAGGA
GAACCACAGGGCATCGACAGGAATTGACAAAGTTGAGAATAACCGATATACAAGGAATTGAGAAACCAGAGACGCCGATTGTCCAT
AAGCCTTTTAAGGCAGCTGATGCAGAGCAACCAGAGCCGGAGCTAGTTGGTTAGAGAGAAGAATCGCTTCCTTTTTTCTTTTGTTG
CTGATGCCAACACTTTAAAGTAAGTTCATCAAACAGTTGCCGATTTGGGCTTCACCTTCTCTGAAGTTTTTTTACAACTAGTAGCT
GAAAAGGCTTTCTTTGTAGTTAGTGGCAATGTTGATACTAAGATATGAACTTGAGTACCTTTAGCTATCTAGTTCATCCTCTTCTG
TTTGATTTTGCTCTTCATTTATACTGGAACTGACCCACGCATTGACACTGTTTGTTTTTGTCTCGATATTCACAAATAAAAGTTTG
CG
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002867320 hypothetical protein ARALYDRAFT_328625 [Arabidopsis lyrata subsp. lyrata] | 1054 | 2e-112 |
| CAA18200 putative protein [Arabidopsis thaliana] | 873 | 2e-091 |
| NP_567861 50S ribosomal protein L21 [Arabidopsis thaliana] | 873 | 2e-091 |
| XP_002519068 50S ribosomal protein L21, mitochondrial precursor, putative [Ricinus communis] | 690 | 3e-070 |
| ADN33989 50S ribosomal protein l21 mitochondrial precursor [Cucumis melo subsp. melo] | 667 | 1e-067 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q8L9A0 50S ribosomal protein L21, mitochondrial | 1070 | 1e-115 |
| P24613 50S ribosomal protein L21, chloroplastic | 319 | 1e-028 |
| P51412 50S ribosomal protein L21, chloroplastic | 286 | 9e-025 |
| Q54IF0 Probable 39S ribosomal protein L21, mitochondrial | 237 | 4e-019 |
| B6IR01 50S ribosomal protein L21 | 234 | 9e-019 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q0WRT4 50S ribosomal protein L21 | 873 | 1e-091 |
| B9RZ99 50S ribosomal protein L21 | 690 | 2e-070 |
| C5YVG2 50S ribosomal protein L21 | 655 | 2e-066 |
| B6TJJ8 50S ribosomal protein L21 | 653 | 4e-066 |
| B4FI28 50S ribosomal protein L21 | 650 | 9e-066 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT4G30930.1 NFD1 (NUCLEAR FUSION DEFECTIVE 1); RNA binding / structural constituent of ribosome | 1071 | 7e-117 |
| AT1G35680.1 50S ribosomal protein L21, chloroplast / CL21 (RPL21) | 286 | 8e-026 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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