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Information for unigene UN50103
| FASTA Sequence |
| Unigene ID: UN50103 | Length: 1245 |
SSR | | AGAGAGCAATAGTAAATAAATAAGAAACAGAGCATACAAACTTTGTCCCCTAGATCAAAAGTAAACAACAAACTTCATAATAAACG
TTTAAAATATTGGAAAGTAACATAAAAGAGTGATGAGCAGAGACCATTTTTAAGGTAATTGATGCTTCTTTTGCCTTTGAAGATTC
AGTGTCCATTGGCTATGGATCCATCGTCTCCTTTCTTGCCATAGAATCTCCGGTACAATGAATCAACCTCTTTCAGATAATAAGTC
CCCGGAGCCAAAAGGTCTATGATACCTTCTTTGGCAGCCTCGTCAATGGAGCTTGCGTTTTTCAAGAAGTCGTTGTACAAGAGACG
AGCAAAGCTTTTCTGTACAAGTTTGTTGTATGGAGAATGGAACACAAAGTAGTCTGCATCATTGATGGAGAACTCTTTGCCTTCGA
GTTTCTCAAACTTGTTGCATAAATGTTTATAGCAGGAGTCAAGTGCCATAAGGTAGCAAGTCTGTGAAAGCTTACCATCAACAACA
GGGTACTCGCTAGCAAGATTTGGTTTGTAAAAGTCATAGACATGAGCCATGTGGCTTCCTCTCAGTTTGCTTTCGAAGACGATAGG
AGCATTAGGTCCTATCAACATAGCAATCGCTGCTGCTCCTCCAGTGGGCCTTGCAGGTCCTTCTGCATATACCGCACTGTCAGTAC
AGATGACAAGGCCATAGCGTCCATCCCAAGAGTTACTCTCAACCCAATTGACACAGTTTAGCAAAGCTGCAGTTCCACCATAACAA
GCATTGGTCGAGTCAACACCTTCCACATCAGTGTTTCCACATTTCTCAAAGAGTTGCATCAAGAAGGTTTTGATGGACTTGCTTTT
GTCAATGACAGTCTCACTTCCTACTTCAAGACGCCCAATTTGCTTGGGGTCGATCTTATACTTTTCTAGAAGAGATGTCACCGCAT
TGAAACTCATTGAGATGACATCTTCAAGCTCAGTGCAGAAAGCCAGACAATCTTGGCCAAGACCAATGGTGTATTTGCCTTTGCTT
GCTCCATCATGAGCTTCCAAAGCTTCCTGTTGAACACAGGTAGGAGGAAAATAGATGTCCATAGCCAGAATCCCAACGTTCTCCGC
CATTGTCGAATGGTAACGAAACGACTTCTTCTTCCAAAGGTTTTAATCTTTCACGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA
GAGAGTTTTGAAGGTGTGTATCAAAGAAAGATGTGAATCCC
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| AAG32923 HMG-CoA synthase [Brassica juncea] | 1460 | 2e-159 |
| AAF69804 HMG-CoA synthase [Brassica juncea] | 1458 | 3e-159 |
| 2F82 Chain A, Hmg-Coa Synthase From Brassica Juncea In The Apo-Form | 1453 | 1e-158 |
| AAG32922 HMG-CoA synthase [Brassica juncea] | 1452 | 1e-158 |
| XP_002874726 hydroxymethylglutaryl-CoA synthase [Arabidopsis lyrata subsp. lyrata] | 1443 | 2e-157 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| P54873 Hydroxymethylglutaryl-CoA synthase | 1435 | 6e-158 |
| P54872 Hydroxymethylglutaryl-CoA synthase A | 938 | 2e-100 |
| Q5R7Z9 Hydroxymethylglutaryl-CoA synthase, cytoplasmic | 897 | 1e-095 |
| Q01581 Hydroxymethylglutaryl-CoA synthase, cytoplasmic | 896 | 2e-095 |
| P23228 Hydroxymethylglutaryl-CoA synthase, cytoplasmic | 881 | 1e-093 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q9FVG1 HMG-CoA synthase | 1460 | 1e-159 |
| Q9M6U3 HMG-CoA synthase | 1458 | 2e-159 |
| Q9FVG2 HMG-CoA synthase | 1452 | 1e-158 |
| Q9FVG0 HMG-CoA synthase | 1441 | 2e-157 |
| Q6QLW8 HMG-CoA synthase 2 | 1340 | 1e-145 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT4G11820.2 MVA1; acetyl-CoA C-acetyltransferase/ hydroxymethylglutaryl-CoA synthase | 1435 | 5e-159 |
| AT4G11820.1 MVA1; acetyl-CoA C-acetyltransferase/ hydroxymethylglutaryl-CoA synthase | 1149 | 8e-126 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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