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Information for unigene UN50123
| FASTA Sequence |
| Unigene ID: UN50123 | Length: 1092 |
SSR | | TTTTTTTCTTCTTCTCCCTAGAATCTGAAGTGGAAGCTTTAGTTTTGTTCTAGCTTCAGTTAAAGTGGAAGAGAGAGAGAGTTAAA
GGAAACGACTTTGGTTGTTGAAGGGTCTGTATGGGTACCTAGGAGAAGAAGGAACTTGTTGTGGCAGGAGGCAAGGATCAGATGCA
TAGTATTAGCTCCAACCCCGCTGGTGACCTTGAGAAGCAGCAGCAGGACAAGGCTCAAGAGAAGCAGAGCGAGTCAGTAGTACATG
AGTCTGCCAAGGAAGTGAACCACCTCACCATTGTTTTCTGCAATGGAGATTCAAGTGGGGCACATGAAACCGTAGAATTGGCTCAG
ATCTATGGGCCAGCAGCTGAGAGGGAAGAGTCCCCCAAAAAGGTTTGCTTGTCCAGAAACTCCAGCTCTCACGAGCAGTGTAGGGT
TTGTCAGCAAGAGAAAGAAGAGGTTTTGATAGAACTGGGGTGCCTATGTCGTGGTGGCCTTGCTAAATCCCATAGGTCATGCATAG
ATGCTTGGTTTCGCACAAAAGGCTCTAATCAGTGCGAGATCTGCCAGGCAGTGGCTGTCAACGTGCCACCTCCGGAGACCCATCCA
ACTACAAATTACTGGGTTTGGAGGATTGATCCCAGCTATAGACAAGAGCAGCGCGAGAGAGGATGTTTCAATCCTCTATGGGTAGC
TTTCTCAATTCTGATAGGCGGTCTAATGCTGGATGTGTTAATATCCATCACACTTGGTGTGTCTGCACTCCCGGTTAACATAATCA
TTGGAGTGATAGTGGTGCTAGGGCTAGGCACAGCACTAAGGCTGACATTGGAGTTTTGTTACGAGTGGAGCTTGAGAAGAGCGGTT
CAGAGGGCAGTGCAGAGGAGTGAAACAGCCTTTAATAACATTGCATATCCACCTGCCTTGTAAGAGAGATAAATGTCAAAGCTGGA
AACATCTTGTGTGTGTTAGTGTGTTATGTAAAAAAAGTTGCGTGAAGACAAAAGTGTGATTGTTTTTACATACAATTATGCTGAAT
TCGTTTGGAGCATCATCTTTTGTGTAGCTTAATTGTTTTACAAAATTAGTATTAACCCCT
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002880184 hypothetical protein ARALYDRAFT_483690 [Arabidopsis lyrata subsp. lyrata] | 865 | 1e-090 |
| NP_566045 RING/U-box domain-containing protein [Arabidopsis thaliana] | 858 | 9e-090 |
| AAM64995 unknown [Arabidopsis thaliana] | 858 | 9e-090 |
| XP_002317039 predicted protein [Populus trichocarpa] | 752 | 2e-077 |
| XP_002518953 ubiquitin-protein ligase, putative [Ricinus communis] | 734 | 2e-075 |
| Swiss-Prot top hits | Score | e value |
|---|
| No hits found | | |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| O64633 At2g45530 | 858 | 6e-090 |
| Q8LB32 Putative uncharacterized protein | 858 | 6e-090 |
| A9PC07 Predicted protein | 752 | 1e-077 |
| B9RYY4 Ubiquitin-protein ligase, putative | 734 | 1e-075 |
| B9GJI5 Predicted protein (Fragment) | 709 | 1e-072 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT2G45530.1 zinc finger (C3HC4-type RING finger) family protein | 859 | 3e-092 |
| AT1G14260.1 zinc finger (C3HC4-type RING finger) family protein | 150 | 4e-010 |
| AT1G14260.2 zinc finger (C3HC4-type RING finger) family protein | 150 | 4e-010 |
| AT2G37950.1 zinc finger (C3HC4-type RING finger) family protein | 149 | 6e-010 |
| AT5G05830.1 zinc finger (C3HC4-type RING finger) family protein | 146 | 1e-009 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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