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Information for unigene UN50134
| FASTA Sequence |
| Unigene ID: UN50134 | Length: 857 |
SSR | | CTTCTTCTTCTTCTTCTTCTTCTTCTCCACCATCTTCAGTTTTTCCTTTAACAACTTTAGCATAATAAAGACGCTCCATATCAATG
CTTAAAGGACATCTCACCCTCTCCATCTCATGTTCCGCATGATCTCTACTCTTCATATGCTTAGTAAAACCGTCAAAGATTTGGCC
TTCAGACGTTTCGCTATGATACACTCCGCACGGCATTATTCTGGGTACAATGCCAACTCCGCATAATGTGCAAAACCAGTTAGATT
CAGTGTACTTCACCCGATGTGCATGTCTTCTTGTCTCTTCTAAATCCACTGCATCTTTAACTAAATTTTCCCAAGGAAGCGATTCA
GAATCGATTACTGAATATCCCTCCTTGCGTAGCTTGAGTGAGTAAAATTCTCATGGGATAAGATTATGAATGTAACAGTCAATGGA
TTGCTCGGCGGGTAAAAAATGAAATCACCAAAAAGGCACCCGAAACCGCGGGGGGTATGACAAAGACGAGTTCCAGTGGAAAATAT
GGCCTCAAGTACATCAGGGTACAGTTGTGAGGTGTAATTGAGGTTGCCAATGGCAGTGATGGTGAGATCATCTACACAGTGCCCTG
CCTTCTTCAAGGCTGATTCTATTGACGAACGGACCAGACGAGCATCGCAATCTTTGGGAACCGGAAAGCTGTTGATGTCCCAGAAC
ACCCATGTTTCTGACAACTTCCTCGCCTTTTTGTTACTCATCTCGTTCCTTCTTCTTATTTATCCGACCGAAACTCGTTTTCTATG
GAAACTGAAACGCCTGAGAGAGAGAGAGAAAGCACGAATGAAACGGCGATAGAGCGACGGCACAACCGCACAAACTTTCCCCC
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002892224 hypothetical protein ARALYDRAFT_887623 [Arabidopsis lyrata subsp. lyrata] | 173 | 2e-010 |
| XP_002872943 predicted protein [Arabidopsis lyrata subsp. lyrata] | 148 | 1e-007 |
| XP_002878041 hypothetical protein ARALYDRAFT_906985 [Arabidopsis lyrata subsp. lyrata] | 146 | 2e-007 |
| NP_198780 Putative endonuclease or glycosyl hydrolase [Arabidopsis thaliana] | 145 | 3e-007 |
| BAB08896 unnamed protein product [Arabidopsis thaliana] | 143 | 5e-007 |
| Swiss-Prot top hits | Score | e value |
|---|
| No hits found | | |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q9FK97 Genomic DNA, chromosome 5, P1 clone:MIJ24 | 143 | 3e-007 |
| Q8H1G2 Putative uncharacterized protein At4g20480 | 140 | 8e-007 |
| Q94AJ6 Putative uncharacterized protein At4g20480 | 140 | 8e-007 |
| Q9SUN1 Putative uncharacterized protein AT4g20480 | 140 | 8e-007 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT5G39640.1 unknown protein | 145 | 1e-009 |
| AT4G20480.1 unknown protein | 140 | 5e-009 |
| AT3G62210.1 EDA32 (embryo sac development arrest 32) | 124 | 3e-007 |
| AT5G35640.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF537 (InterPro:IPR007491); BEST Arabidopsis thaliana protein match is: zinc ion binding (TAIR:AT1G01355.1); Has 85 Blast hits to 83 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 85; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | 118 | 2e-006 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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