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Information for unigene UN50162
| FASTA Sequence |
| Unigene ID: UN50162 | Length: 956 |
SSR | | AACCCAAGACCATACTACTGGTCGTGCGTTATTGCTCATTGCAACGTTTGTGGACAACATTGGCATAGTGTTCAAAATTCAAATCA
TCACATCTACCAAAACTATAAATAAAAAGAGAGAGAGAGAGGATCTCACATGAACAGAGCGAGATCAGCAAGTTTGAGGTTGTGTG
TTTGTCATCATTCTTCATCCCATTTGTCTTTAGGGATCTCTCCAAAATCAGCAATCACAACTTTCTTCCTTGGTTTGCCACTGTAA
GTACCAGCCCCACCTTCAATGGCGAACACATAGTCCATCCCTTGTATCACCTTCCCAAACACAACATGTTCCCCTTCCAACCAGGA
AGCCTTGACAGTGGTGATAAAGAACTGTGAGACATTAGAATCAGGTCCTGTATTACCCATCGCTACAACACCTGCATGTGAATGCT
TTGCTTTGAAATTTTCGTCAAGAAAGGCACCACCATAGATTGATTCGCTCCCTTTTCCATCACCGTGGATTACGTCTCCTCCTTGG
ACTACGAATCCAGATACTATACGGTGAAACTGTGTTCCTTTGTAATGTAGAGGCTTTCCGCCTAAAGCTTTTCCCTTCTCTCCTGT
GCACAAAGCCCTGAAATTTTCAACGGTTTTGGGTACAAGAGTGCCGTATAATCCTATAACGATCCTGCCTAAGCGCTGGCCGTCGA
CATCAATATCGAGGAATACTCTGTGTGTAACTTGGTAATCCTCCTCGATGACTTGCTTCTGCTCCTCCTCTTTACGTCGGGTGTGT
GAGCGCGAATAAGAGAAGAATCGTAAGGGCAACGATGAGAAGAAGGCACCTGGGCCGCCGTACCAGAAACGAGGTCTCTTTACTCA
TCTTTATTTCTTTCTTCTTAAGAATTCATCTCACGTGAACCAACCAACACAGAGCTCTCGATCTCACCCTCCAAATCAAAATAAGG
GGGACTCTCC
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| BAF81521 putative peptidyl-prolyl cis-trans isomerase [Brassica rapa] | 913 | 3e-096 |
| XP_002869115 hypothetical protein ARALYDRAFT_491161 [Arabidopsis lyrata subsp. lyrata] | 884 | 7e-093 |
| NP_195222 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein [Arabidopsis thaliana] | 873 | 1e-091 |
| XP_002313720 predicted protein [Populus trichocarpa] | 817 | 4e-085 |
| XP_002533862 peptidyl-prolyl cis-trans isomerase, putative [Ricinus communis] | 814 | 9e-085 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q8LDP4 Peptidyl-prolyl cis-trans isomerase CYP19-4 | 610 | 2e-062 |
| Q9SP02 Peptidyl-prolyl cis-trans isomerase CYP20-1 | 581 | 4e-059 |
| Q9TW32 Peptidyl-prolyl cis-trans isomerase B | 546 | 5e-055 |
| P52015 Peptidyl-prolyl cis-trans isomerase 7 | 525 | 1e-052 |
| P52011 Peptidyl-prolyl cis-trans isomerase 3 | 514 | 3e-051 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| A8CF54 Peptidyl-prolyl cis-trans isomerase | 913 | 2e-096 |
| O49605 Peptidyl-prolyl cis-trans isomerase | 873 | 9e-092 |
| B9HR79 Predicted protein | 817 | 3e-085 |
| B9T6J3 Peptidyl-prolyl cis-trans isomerase | 814 | 6e-085 |
| C6TBD7 Peptidyl-prolyl cis-trans isomerase | 806 | 5e-084 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT4G34960.1 peptidyl-prolyl cis-trans isomerase, putative / cyclophilin, putative / rotamase, putative | 873 | 5e-094 |
| AT2G29960.1 CYP5 (CYCLOPHILIN 5); peptidyl-prolyl cis-trans isomerase | 610 | 2e-063 |
| AT5G58710.1 ROC7; peptidyl-prolyl cis-trans isomerase | 581 | 4e-060 |
| AT3G55920.1 peptidyl-prolyl cis-trans isomerase, putative / cyclophilin, putative / rotamase, putative | 552 | 9e-057 |
| AT4G38740.1 ROC1 (ROTAMASE CYP 1); peptidyl-prolyl cis-trans isomerase | 507 | 1e-051 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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