 |
Information for unigene UN50180
| FASTA Sequence |
| Unigene ID: UN50180 | Length: 1036 |
SSR | | GGATCACTCACCACCGGATAACTTCCGTCGTCGTCGTCGTCTTCCGCCGCAGGCTTTTTCTCCATGGCCGGCGTAAATCTACATCT
CCGTCACTCCGTTGCTCAATTGATTCCAGCTGTTTCTTCTTCCCCTCCTCCTCCTCAGCGATTCCAGCTCGGAATCTCACCTTCTC
GTGTTCTCTTCCCTAATCTCCGAGCTAACTCCCCCGCCGCCGCTCTATCCCTGCGAACCACTCGCCGTTCGAACACTGTTTCCGCG
TCTCCCGTCGGTTCTTCCACCTCCTCGGATTCGTTGGCGGGAGATGGAGACGAAGCGGGAAGGAGGACGCCTTTGCTCGAGGTGAA
GGATCTGAGAGCTGTGATTGTTGAATCGAGGCAGGAGATACTAAAGGGAGTCAACTTGGTTGTCTACGAAGGAGAGATACACGCAG
TGATGGGGAAGAATGGTTCAGGGAAGAGCACATTCTCTAAGGTTCTTGTTGGTCATCCTGATTATGAAGTGACGGGAGGGAGTATT
GTATTCAAAGGGCAGAATCTACTTGATATGGAACCTGAGGAAAGATCTCTTGCTGGCTTGTTTATGAGTTTCCAGTCCCCAGTTGA
GATCCCTGGTGTTAGCAATATGGATTTCTTGAATATGGCTTTCAATGCTCGCAAAAGGAAGCTTGGTCAGCCAGAGCTTGATCCAA
TCCAGTTCTACAGCCACTTAGTATCTAAGCTTGAAGTCGTGAATATGAAGACGGATTTTCTGAACCGGAATGTGAATGAAGGGTTT
AGTGGTGGTGAAAGGAAACGCAATGAGATTCTACAGTTAGCGGTCCTCGGAGCCGAGTTGGCTATACTGGACGAGATAGATTCAGG
GCTTGTGAAAAGTTCAGCGACGAAGAAGAGGAATCTGAGTTCAAGGCTAGAACAAGAACCACCACAACTACTCGTGTTCAAAGTAG
AGGCAAGGATTATGTTTTTTGCTTAAAGCAAATCCCTTTCTGTAACTTTATGTGCCTTGGAGCTATGCTAATAATATCTACCTTTG
CTGT
|
|
|
| GenBank top hits (Blast detail) | Score | e value |
|---|
| NP_187678 ABC transporter I family member 6 [Arabidopsis thaliana] | 1114 | 2e-119 |
| AAM61568 putative ABC transporter ATPase [Arabidopsis thaliana] | 1108 | 9e-119 |
| XP_002884806 ATNAP7 [Arabidopsis lyrata subsp. lyrata] | 1102 | 4e-118 |
| AAF19582 putative ABC transporter [Arabidopsis thaliana] | 1046 | 1e-111 |
| XP_002310964 white-brown-complex ABC transporter family [Populus trichocarpa] | 872 | 2e-091 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q9CAF5 ABC transporter I family member 6, chloroplastic | 1114 | 8e-121 |
| P48255 Probable ATP-dependent transporter ycf16 | 598 | 5e-061 |
| Q00830 Probable ATP-dependent transporter ycf16 | 565 | 3e-057 |
| Q55791 Probable ATP-dependent transporter slr0075 | 557 | 3e-056 |
| O78474 Probable ATP-dependent transporter ycf16 | 546 | 6e-055 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| B9HKI2 White-brown-complex ABC transporter family | 872 | 1e-091 |
| B9SCB8 Abc transporter, putative | 827 | 2e-086 |
| Q2PER0 Putative ABC transporter like ATPase (Fragment) | 732 | 2e-075 |
| C6T8N7 Putative uncharacterized protein | 724 | 2e-074 |
| A9P088 Putative uncharacterized protein | 690 | 2e-070 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT3G10670.1 ATNAP7; ATPase, coupled to transmembrane movement of substances / protein binding / transporter | 1114 | 7e-122 |
| AT5G60740.1 ATPase, coupled to transmembrane movement of substances | 143 | 3e-009 |
| AT3G25620.1 ABC transporter family protein | 131 | 7e-008 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
|
|
|
|
