RadishBase

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Information for unigene UN50225

FASTA Sequence

Unigene ID: UN50225	Length: 1059	SSR
GGGAATCTCTCTCTCTCTCTTTCTCGTACGCCGCACAAACCATTGAATCCACGAAAAAACCTCACCTCAGTCCATGGCGACCAACG AACCCGAGCACGAGAACAGAGACGCAGAAGAATCCGGAGCTAACGAGGATGAGGACACCGGAGCTCAGGTCGCTCCGATCGTTAGG CTTGAGGAAGTTGCCGTCACTACCGGTGAGGAAGACGAAGACGCCATCCTCGATCTGAAATCGAAGCTGTATCGGTTCGACAAGGA AGCGAATCAGTGGAAGGAGAGAGGTGCTGGTACTGTGAAGCTCTTGAAGCATAAGAGCACTGGCAAGATTCGTCTCGTTATGAGGC AATCTAAAACTCTCAAGATCTGTGCCAATCATTTCGTTAAACAGGGCATGTCTGTTCAGGAACACGTTGGAAACGAGAAGTCTTGT GTGTGGCACGCTCGTGACTTTGCTGATGGAGAGCTAAAGGATGAGCTTTTCTGCATCCGATTTGCTTCAATTGAGAACTGCAAAGC ATTTATGCAGAAGTTCAATGAAGTGGCTGAATCTGAAGTAGAGAAAGAAGAGAGCAAAGATGCATCTGACACCGCTGGTCTTCTTG AGAAGTTGTCCGTTGAAGAGACAAAAACAGAGGAGAAACCTGTGGAGAAGGTGAAGACCGAAGTTGAAGCAGATGAAAAGACAAAA ACCGAGCCAGAGAAAGCTGGTGAAGAAAAGAAAACCGAAGAGGCTGCTCCCTCAACTTAAGATGCATCAATGTTTAAGCTCCTTTG GCGAGGTATTATTAGCCTTGTTTTGATGCATCCATCTCGAGTTTACTAGTGTCCCGGCACTAACTATCATCTACATGTGTTGTCGG ATCATATCAAGTGGTTTGGGGTTGGGTTTTGCTGAGTCGTTTTGGGTTTTATAGTTTTGAGTCGAAAGTGTGGGCGAGTGATATGA GAGATCAAGGTTCGGTTAATCAGTAAAGTACAGTGAATTCATTGTTTTCAGCGTCTGTTATTGGTTCTTTTTGGATGGTCTTTATT TTGAGGATAGAGATGGTTGTTTTCATG

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
ABB97039 unknown [Brassica rapa]	1095	3e-117
XP_002892383 hypothetical protein ARALYDRAFT_334013 [Arabidopsis lyrata subsp. lyrata]	1024	5e-109
NP_172194 Ran-binding protein 1-a [Arabidopsis thaliana]	1016	4e-108
CAA66045 atranbp1a [Arabidopsis thaliana]	1000	3e-106
AAD39835 Ran-binding protein siRanBP [Arabidopsis thaliana]	970	9e-103

Swiss-Prot top hits (Blast detail)	Score	e value
Q9LMK7 Ran-binding protein 1 homolog a	1016	2e-109
Q8RWG8 Ran-binding protein 1 homolog b	880	1e-093
P92985 Ran-binding protein 1 homolog c	810	1e-085
Q3T0M7 Ran-specific GTPase-activating protein	366	4e-034
P49792 E3 SUMO-protein ligase RanBP2	348	5e-032

TrEMBL top hits (Blast detail)	Score	e value
Q2V602 Putative uncharacterized protein	1095	2e-117
Q1WWI2 At5g58590	810	2e-084
B9HND6 Predicted protein	808	4e-084
A9P8P1 Predicted protein	805	8e-084
A9P8D0 Putative uncharacterized protein	766	3e-079

Arabidopsis top hits (Blast detail)	Score	e value
AT1G07140.1 SIRANBP; Ran GTPase binding	1017	1e-110
AT2G30060.1 Ran-binding protein 1b (RanBP1b)	880	9e-095
AT5G58590.1 RANBP1 (RAN BINDING PROTEIN 1); protein binding	810	1e-086

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


7	2			100%

Unigene Members	Member information