 |
Information for unigene UN50269
| FASTA Sequence |
| Unigene ID: UN50269 | Length: 807 |
SSR | | TTTTTGCCCTTCACACGGTTAGGGTTGTTCCACAAAGTTGACTCTCAGATCGGAGCAAGCTCTCTCTCGAGAACCAAAGAAGAAGA
AGGCCAATCATGTCTAGGCAAGTCGCAGCAAGGCTTCTCGGATCTCTGTCTCGCCGTTGCTCAAGCACCAGCAGCAGCAGCAGCTC
TGAAGTGTTCCCAACTCTCAGCTCATTGACCCAATCTCGCTCATTCGCGTCTGATCCTCCGCCTCCAGCTGCCGTCTTCGTTGACA
AAAACACAAGAGTCATGTGTCAAGGCATCACCGGAAAGAACGGAACTTTCCACACCGAACAAGCCATTGAGTACGGCACCAAAATG
GTGGCAGGAGTGACACCAAAGAAGGGTGGAACAGAGCACTTAGGTCTCCCTGTATTCAACTCTGTTGCTGAAGCCAAGGCTGAGAC
CAAAGCCAATGCCTCTGTCATTTATGTTCCCGCGCCTTTCGCTGCTGCTGCTATTATGGAGGGTATACAAGCTGAGTTGGATCTTA
TTGTCTGCATTACTGAAGGAATCCCTCAGCATGACATGGTACGTGTAAAGCATGCACTCAACAGTCAATCAAAAACTAGGCTGATT
GGTCCAAACTGCCCTGGGATCATCAAGCCTGGTGAGTGCAAGATTGGTATTATGCCTGGATACATCCACAAGCCTGGCAAGATTGG
GATCGTCTCTCGTTCTGGAACCCTTACATATGAAGCTGTTTCCAACAACTGCGGTGGGCTAGCCAATCTACGTGTGTAGAATTGGT
GGAGATCCTTTATGGGACAACTTTGTCGACTGC
|
|
|
| GenBank top hits (Blast detail) | Score | e value |
|---|
| NP_196447 Succinyl-CoA ligase [GDP-forming] subunit alpha-1 [Arabidopsis thaliana] | 963 | 4e-102 |
| XP_002871316 hypothetical protein ARALYDRAFT_487662 [Arabidopsis lyrata subsp. lyrata] | 963 | 4e-102 |
| XP_002872045 hypothetical protein ARALYDRAFT_489184 [Arabidopsis lyrata subsp. lyrata] | 911 | 4e-096 |
| NP_197716 Succinyl-CoA ligase [GDP-forming] subunit alpha-2 [Arabidopsis thaliana] | 906 | 1e-095 |
| AAM65450 succinyl-CoA synthetase, alpha subunit [Arabidopsis thaliana] | 906 | 1e-095 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| P68209 Succinyl-CoA ligase [GDP-forming] subunit alpha-1, mitochondrial | 963 | 2e-103 |
| Q8LAD2 Succinyl-CoA ligase [GDP-forming] subunit alpha-2, mitochondrial | 906 | 7e-097 |
| Q6ZL94 Probable succinyl-CoA ligase [GDP-forming] subunit alpha, mitochondrial | 794 | 7e-084 |
| P13086 Succinyl-CoA ligase [GDP-forming] subunit alpha, mitochondrial | 666 | 5e-069 |
| P53597 Succinyl-CoA ligase [GDP-forming] subunit alpha, mitochondrial | 661 | 2e-068 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| B3H632 Uncharacterized protein At5g23250.2 | 906 | 1e-095 |
| A9PFB5 Putative uncharacterized protein | 840 | 5e-088 |
| A9PDB9 Putative uncharacterized protein | 831 | 5e-087 |
| B9N355 Predicted protein | 828 | 1e-086 |
| B9RL91 Succinyl-CoA ligase [GDP-forming] subunit alpha-2, mitochondrial, putative | 827 | 1e-086 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT5G08300.1 succinyl-CoA ligase (GDP-forming) alpha-chain, mitochondrial, putative / succinyl-CoA synthetase, alpha chain, putative / SCS-alpha, putative | 963 | 2e-104 |
| AT5G23250.1 succinyl-CoA ligase (GDP-forming) alpha-chain, mitochondrial, putative / succinyl-CoA synthetase, alpha chain, putative / SCS-alpha, putative | 906 | 6e-098 |
| AT5G23250.2 succinyl-CoA ligase (GDP-forming) alpha-chain, mitochondrial, putative / succinyl-CoA synthetase, alpha chain, putative / SCS-alpha, putative | 906 | 6e-098 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
|
|
|
|
