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Information for unigene UN50301

FASTA Sequence
Unigene ID: UN50301Length: 987 SSR 
GGACTTTCACACTCACAACACATAGAGAGAGAGAGAAAGAAACCTTTTTGCCTTTCACATTCACTCATCTCTCTAAGATCACTTTA
CTCTGATTTAGGGTTTCTCTCATAAACAGACACTCCGCCATGAACATTTTCAGGAAGAAGACTACTCCCAAAGATGCTCTTCGCAC
CAGTAAGAGAGAAATGTCTGTGGCTACAAGAGGTATCGAACGAGAGATTTCATCTCTTCAGATGGAGGTAAATAAACATATATGGT
AGACATATAAGTTTTCTTTACGGTTCAATTGACATTGGTCAAGTCACAATCAGGAGAAGAGACTAGTTGCTGAGATCAAGAAAACT
GCTAAAACTGGAAACGAGGCGGCGACAAAGATTTTAGCACGTCAACTTGTTAGATGGAGGCAACAGATTACAAACTTACAGGGAAG
CCGTGCTCAGATTAGAGGTGTAACCACTCACACACAGGCTCTGTATGCGAGCACTTCGATTTCTTCTGGTATGAAAGGTGCAACCA
AAGCTATGGTTGCAATGAACAAGCAAATGGCACCAACGAAACAAGCCAAGGTGATTAAGGACTTCCAGAAACAGTCTGCACAGCTA
GACATGACGATAGAGATGATGTCAGAGGCAATTGATGAAACACTTGACAAAGATGAGGCTGAAGAAGAAACAGACGACCTCACTAA
CCAAGTTCTTGATGAGATTGGTGTTGGAGTTGCATCTCAGTTATCTTCAGCTCCAAAAGGTCGCATCGCTACAAAAACTGCAGCTC
CTCCTACTACCACTGCCAACAGCAACAGCTCTGAATCAAGTGAAGTGGATGAGCTTGAAAAGAGGTTGGCTTCACTGCGAAGAATC
TGAGAGTCAGCTTTTATGCATGCTGTATGATTAAATAAAAAAAATAACAGCTTCCCTTTTTTTTCTTTTTGCTTCTTGTGATCTCT
GTATAAATCTACTGAAACTTATTACGTTGGAAGCTTAATTG

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
XP_002862972 predicted protein [Arabidopsis lyrata subsp. lyrata]8372e-087
NP_199269 vacuolar protein sorting-associated protein 2-2 [Arabidopsis thaliana]8363e-087
NP_001119371 vacuolar protein sorting-associated protein 2-2 [Arabidopsis thaliana]8363e-087
BAE99414 hypothetical protein [Arabidopsis thaliana]8354e-087
XP_002865358 hypothetical protein ARALYDRAFT_494532 [Arabidopsis lyrata subsp. lyrata]8311e-086

Swiss-Prot top hits (Blast detail)Scoree value
Q0WTY4 Vacuolar protein sorting-associated protein 2 homolog 28361e-088
Q941D5 Vacuolar protein sorting-associated protein 2 homolog 35815e-059
Q9SKI2 Vacuolar protein sorting-associated protein 2 homolog 13701e-034
Q6NXD2 Charged multivesicular body protein 2b3314e-030
O43633 Charged multivesicular body protein 2a3208e-029

TrEMBL top hits (Blast detail)Scoree value
A5AK81 Putative uncharacterized protein7091e-072
B9GIE6 Predicted protein7053e-072
B7FHD8 Putative uncharacterized protein6929e-071
B9I0U7 Predicted protein6856e-070
B9SV62 Charged multivesicular body protein 2b-B, putative6848e-070

Arabidopsis top hits (Blast detail)Scoree value
AT5G44560.1 VPS2.28378e-090
AT5G44560.2 VPS2.28378e-090
AT1G03950.1 VPS2.3 (VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 2.3)5814e-060
AT2G06530.1 VPS2.13719e-036
AT5G22950.1 VPS24.11853e-014

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
61  33%
 
72  67%

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