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Information for unigene UN50388
| FASTA Sequence |
| Unigene ID: UN50388 | Length: 913 |
SSR | | GGGATTCAGAGCCGAAACGAGTCTTCTAAGCTGTGGGGTACTTGCAGGTTGCTAGTCGAGGGGAGAGTCAAACACCATTTCCTTGT
TGCAGACGGGGCAAGTTTCACTTCTCTCCATCCATTCTAGAATGCATGCAAGGTGAAAATGGTGCTCACATTTGGCTAGAAGTTTC
GGGTTATCCATATCATATTCTTCCAAGCATATAGGACAATCCTCCTCTTCCTCTATTGGTACAAAGACGTCTTTCGATAGCTTCTT
GGGGTCTATTTCTTCAGTAGCTCCAAGATCAATCTCTCCCTGTTGTTTGCTTTCTGTTTCTTTACACGGGCATGTTGTAGCTGGAA
CCCCGAGAGTGATACCATCGACTGTTGCTTGAGCTGACTCAGTATTAGGGGCTTCAACTGAGACTTCTCTTATATCAACACAAGCA
GACTCTTCACGGATTTCTGGAGTTTGAGGAACACCTATAGCCACATCGAAAGGAGTAGGGAGCGGTGGTGGTATATAAGCATCGGG
AGATGAAGTCTCTAAGTTTGTGTCAACTACAACAACACCAGAGGAGATTGTAGAGGAAGTCCTGTTAAGAGCGGAAGATAAAGGAA
CACGCTCTTCTGTTGCTCTCGGATAGTAATAGTAGGGAGGTCCATTATCAACATCAGCTCCTCTTCGTGAAGAAGAACGACAACAG
CAGCCTCCCATTATGTTTGTTTTTTTTTGTGTGTTCTTTATCACAACTCCAAAAGCCGAAGACTCTGCATCTATGCCTTTCTCGAG
ATTGAATCAGGAAGAGGAAGTTCAAAATCTCAAAATCAAAGCGAGAGCGAGAGAGAGAGAGAGTTGTTGCTGCTTTTTCTCTCTTG
GGAGAAGCCTTCTTTTTCGTCCCCTCTCTGCTTTTGCGCTGCTGTGTTGTTTA
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002868602 zinc finger family protein [Arabidopsis lyrata subsp. lyrata] | 938 | 4e-099 |
| NP_568590 RING/U-box domain-containing protein [Arabidopsis thaliana] | 936 | 6e-099 |
| BAB08507 unnamed protein product [Arabidopsis thaliana] | 897 | 2e-094 |
| ADK63400 C3HC4 type zinc finger protein [Brassica rapa] | 846 | 2e-088 |
| XP_002509832 protein binding protein, putative [Ricinus communis] | 537 | 1e-052 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q8LE94 E3 ubiquitin-protein ligase At3g02290 | 228 | 3e-018 |
| Q4TU14 E3 ubiquitin-protein ligase RHF1A | 153 | 2e-009 |
| Q9ZT42 E3 ubiquitin-protein ligase RHF2A | 143 | 2e-008 |
| Q9Y4L5 E3 ubiquitin-protein ligase RNF115 | 142 | 3e-008 |
| Q9D0C1 E3 ubiquitin-protein ligase RNF115 | 142 | 3e-008 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q94AB7 AT5g41350/MYC6_6 | 936 | 4e-099 |
| Q9FN65 Genomic DNA, chromosome 5, P1 clone:MYC6 | 897 | 1e-094 |
| B9RCE8 Protein binding protein, putative | 537 | 8e-053 |
| C6TH46 Putative uncharacterized protein | 535 | 1e-052 |
| B9GKF5 Predicted protein | 531 | 4e-052 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT5G41350.1 zinc finger (C3HC4-type RING finger) family protein | 937 | 2e-101 |
| AT4G00335.1 RHB1A; protein binding / zinc ion binding | 242 | 7e-021 |
| AT4G00335.2 RHB1A; protein binding / zinc ion binding | 242 | 7e-021 |
| AT3G02290.1 zinc finger (C3HC4-type RING finger) family protein | 228 | 3e-019 |
| AT4G23450.1 zinc finger (C3HC4-type RING finger) family protein | 228 | 3e-019 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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