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Information for unigene UN50391
| FASTA Sequence |
| Unigene ID: UN50391 | Length: 1112 |
SSR | | GGATCCCCCCTTCTCAACAAAAGCAATTCGTTCATCGCTGCGTTGGAGAAATCAACGAAAGAGAGAGAGAAGATGAGTTTTCAAGA
TTTAGAAGCAGGGAGAGGAGGAAGATCGAGGAAGATGAATGGAGGTGGTCGCCAAGATTCCACGCAAGCCGTCGCTTCGGGTATCT
TCCAGATCAATACCGGAGTCTCCACCTTTCAGCGGCTCGTTAACACGCTCGGTACTCCCAAAGATACCCCCGAGCTCCGTGACAAG
CTGCACAAGACACGGTTGCATATTGGCCAGCTTGTGAAGGACACTTCTGCTAAGCTTAAATAAGCTAGTGAAACTGATCATCGAAC
CCGTGTCAATGCAAGTAAGAAGATTGCAGATGCTAAGCTAGCAAAGGACTTTCAAGCTGTGTTGAAAGAGTTTCAGAAAGCTCAAC
AGACTGCTGCTGAAAGAGAAACCTCTTATGCTCCTCTCCTCCCTCCTTCTTCTCTTCCCTCTAGCTATACAGCGAGTGAAGTAGAC
AATATTCCTGAACAGAGGGCACAAGTTATGGAATCAAAAAGGCAGGAACTTGTATTGTTAGACAACGAGATTGCTTTCAACGAAGC
TGTGATCGAAGAAAGAGAACAAGTGATACAAGAAATCCACACTCAAATCGGAGAGGTTAACGAAATTTTCAAAGATCTCGCGGTTC
TTGTTAACGACCAAGGAGTCATGATTGATGATATTGGTACTCACATTGACAACTCTCGAGCTGCAACTGCTCAAGGAAAATTTCAG
CTCGCTCAAGCCTCCAAAACCCAAAGATCAAACTCATTTTTGACATGCTTGCTCTTGGTGATATTTGGCATTGTACTCCTGATTGT
TATCATCGTACTCGCAGCTTGATTTTGGAAAAGCAAGAACCAAGTCTTTCAATGTGTTCAACGAGTGAGTGCGACTACTTTGGTAT
ATATAAGATAAATTTGCGGACAAAAAGCGTAGAAGTTGGGTTTTGTATTGGTTCGGTTTGAGGATTTATTGGTGAATGTAACAGAG
TGCGTGTGTGTGTGTTGGTTTTTTTTGTGGTGCAAAACTATTTGTTGCGAGATATTGGTTTAATTTTTTTTCAAAAAAAA
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002863386 hypothetical protein ARALYDRAFT_494291 [Arabidopsis lyrata subsp. lyrata] | 1158 | 2e-124 |
| NP_568671 syntaxin-22 [Arabidopsis thaliana] | 1154 | 4e-124 |
| ACU18736 unknown [Glycine max] | 1031 | 8e-110 |
| AAN03474 syntaxin [Glycine max] | 1030 | 1e-109 |
| ABA46757 syntaxin-like protein [Solanum tuberosum] | 1024 | 5e-109 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| C6TA84 Putative uncharacterized protein | 1031 | 6e-110 |
| Q8LJR4 Syntaxin | 1030 | 7e-110 |
| Q3HRZ4 Syntaxin-like protein | 1024 | 4e-109 |
| B9SNS6 Syntaxin, plant, putative | 1018 | 2e-108 |
| A5BYQ4 Putative uncharacterized protein | 1017 | 2e-108 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT5G46860.1 VAM3; SNAP receptor | 1160 | 3e-127 |
| AT4G17730.2 SYP23 (SYNTAXIN OF PLANTS 23); SNAP receptor | 915 | 9e-099 |
| AT4G17730.1 SYP23 (SYNTAXIN OF PLANTS 23); SNAP receptor | 909 | 4e-098 |
| AT5G16830.1 SYP21 (SYNTAXIN OF PLANTS 21); SNAP receptor | 780 | 4e-083 |
| AT1G32270.1 ATSYP24; SNAP receptor/ protein binding | 525 | 1e-053 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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