RadishBase

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Information for unigene UN50429

FASTA Sequence

Unigene ID: UN50429	Length: 857	SSR
GGGGGGTTTATTCACTCTATTATATGATTCTAATACAAATATCATTTCAGAAGCAAACAGGAATCTCACACATTTACAGAGAAACT ACACACAAAAGAGGTAAACCTCAGAGAGAGAGAGAGAAGAATCAGATTGAGTTTGGAATACACAAGGAATAACAATTCGATTTTTT TTTTTGTATGAACATGGATATTCGGTCTCACTAGCTGCAGCAGCCAGTTTGGGGAGTAGTCTGGTGATCTGTGTTCTGCTTCAAGA TGTTTCTCTTCACAGCACTTGATCCTTCTTCCAAAAGACTAGGTACCTCCATTATCTTCAACGCCAGCTCTTCGAAACATTGCTCG ACGTTTTGTCGAGTTCTAGCACTACACTCGAGAAACATGCACTTGAGTTCTTTCGCTAGAGCAATCCCTTCTTCTCTGCTAACTCC TCTCTCAGATTCTCGATCAACTTTGTTTCCTTGGGCGCCTCTGTAGTAAGAGCTCGTCAATGTTCTAAACCGTTCCTGTCCAGCTG TGTCCCAGATTGTGAGTTTCAGTCTTTTGCCTCCTACTGTCAACTGTTTAATCTTGAAATCAACACCGATGGTAGGAGCGAGATCT TCGACGGAGGTGGAAATGAAGCTGACAAGCAAACTGCTTTTACCAACACCAGAATCTCCAATCAACAATATCTTAAACGACAGATC GTTTCCACTTTTCCCTGATGACGACCCCATTCTCTCTGAGAGATCAAATCAAAATCAAATCCAACTTATTCAACAACTTAATAAAA GGCGACTCATTTCTTTATTATAGAAAATGCGAATCTCATGTAGCTGTCTGTAATGCCTAATGATGATGATGATGATGATGATC

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
NP_568121 RAB GTPase-C2A [Arabidopsis thaliana]	416	1e-038
XP_002267276 PREDICTED: hypothetical protein [Vitis vinifera]	395	3e-036
XP_002326383 predicted protein [Populus trichocarpa]	391	9e-036
NP_187602 RAB GTPase-like protein C2B [Arabidopsis thaliana]	387	3e-035
XP_002519452 protein with unknown function [Ricinus communis]	387	3e-035

Swiss-Prot top hits (Blast detail)	Score	e value
P36862 GTP-binding protein yptV3	278	5e-024
Q54NU2 Ras-related protein Rab-1D	265	2e-022
Q4R8X3 Ras-related protein Rab-1B	258	1e-021
Q6DHC1 Ras-related protein Rab-18-B	257	1e-021
Q0IIG8 Ras-related protein Rab-18	256	2e-021

TrEMBL top hits (Blast detail)	Score	e value
O49841 AtRab GTP-binding protein	416	8e-039
B9MTI0 Predicted protein	391	6e-036
B9S0D3 Putative uncharacterized protein	387	2e-035
Q9SF92 At3g09910	387	2e-035
C6T7M4 Putative uncharacterized protein	380	1e-034

Arabidopsis top hits (Blast detail)	Score	e value
AT5G03530.1 RABC2A (RAB GTPASE HOMOLOG C2A); GTP binding / GTP-dependent protein binding / myosin XI tail binding	416	4e-041
AT3G09910.1 ATRABC2B (ARABIDOPSIS RAB GTPASE HOMOLOG C2B); ATP binding / GTP binding / transcription factor binding	387	1e-037
AT1G43890.1 ATRAB18 (ARABIDOPSIS RAB GTPASE HOMOLOG B18); GTP binding	343	1e-032
AT1G43890.2 ATRAB18 (ARABIDOPSIS RAB GTPASE HOMOLOG B18); GTP binding	343	1e-032
AT1G43890.3 ATRAB18 (ARABIDOPSIS RAB GTPASE HOMOLOG B18); GTP binding	343	1e-032

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


9	2			100%

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