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Information for unigene UN50431
| FASTA Sequence |
| Unigene ID: UN50431 | Length: 993 |
SSR | | AAAGGATTTAGGGATTTCCACACTAAATGAAACCATGAAAGAGTACAAATCAAATCACGAAAGAGTCTGTTGAGTCAAAAATGTAC
ATCCAATACAACTGAAGAAGCAAACCTTTTAATGGACAAAAAACAAAAGTAGAACAGATCATAGATAGAGAGAGAGAGAGGGTTAA
CAGAGTAGAATACCCCAAAACCGTTTTGGATATTAGCCTTTTTATGTGGGAGAAGAAGCTAAGGTGAGTTTTAGGATGAAACCGAT
GATAAGTCCAATGAGTCCAACCAAAGCTGCCAACTTCAAGGATAACCCATTTCCGCTGTTATTTCTTCGTTTCTTCACCATCTCCA
ATTCATGTTGCAGCTGTTGTGTTTGCTTTACAGCTGCATCTCGCTCTTCTTTCAACCGCTGAACAGTAGAGATGGTTTCAGAGGAA
TTTGCATCGACATTGGTAGCTCCAGAATCAGAGGATCTTTGGGTTGTAGTAGAGGAGGAGATATAAGAGACCTTGAGCTTACACTC
CGTTAATGTTTTCCCACTGTCCTTTGTAAAAGTGTCTTGGGGAAGGTCATCAACATCAGTGTGGGGAGGAACAAGGGTGCTTTGAA
GGAGAAACTTGTCTTTGCACTGCATGTCTGGAGGATACTCCCTTTGCGCTTGTAGAGTAACTCGAATGATGCAGGAGTCCCAGGGC
TGAATGACACCAGTGTTGGGTCTTACAAAATACTTTTTTGGAGATGTTGTCTTTACCTTGAAAGCAACATAGTTGTCAGTTTTATT
GGCAACTTTAAGATCACAGTAGCTTTGTTTCTCGAGTTCAAAAAGGAATTTGAGTTCATCAGGTACAATGGAGATAAGTTGGTTCT
CGCCCACGCCAGACATTTCCACACACAAGAATCGATTCTCAAATCTCTACAACTCGGAACGTATACAATACATCCAAATCCAAACC
CCCTTTTCAAACAATTCCAGATTCTTCTTTTCTTTTCTCCAGAAAAT
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| GenBank top hits (Blast detail) | Score | e value |
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| NP_199529 VAMP (vesicle-associated membrane protein) family protein [Arabidopsis thaliana] | 1007 | 4e-107 |
| XP_002863353 vesicle-associated membrane family protein [Arabidopsis lyrata subsp. lyrata] | 1005 | 7e-107 |
| ABD65040 vesicle-associated membrane protein, putative [Brassica oleracea] | 917 | 1e-096 |
| XP_002531789 vesicle-associated membrane protein, putative [Ricinus communis] | 736 | 1e-075 |
| AAO32056 putative VAMP-associated protein [Brassica rapa subsp. pekinensis] | 729 | 7e-075 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
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| Q16943 Vesicle-associated membrane protein/synaptobrevin-binding protein | 178 | 2e-012 |
| Q9P0L0 Vesicle-associated membrane protein-associated protein A | 176 | 4e-012 |
| Q5R601 Vesicle-associated membrane protein-associated protein A | 176 | 4e-012 |
| Q9Z269 Vesicle-associated membrane protein-associated protein B | 176 | 4e-012 |
| Q10484 Uncharacterized protein C17C9.12 | 176 | 4e-012 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q9LVU1 Putative VAMP (Vesicle-associated membrane protein)-associated protein | 1007 | 3e-107 |
| Q2A9M0 Vesicle-associated membrane protein, putative | 917 | 8e-097 |
| B9T0M0 Vesicle-associated membrane protein, putative | 736 | 8e-076 |
| Q84XQ0 Putative VAMP-associated protein (Fragment) | 729 | 5e-075 |
| B9GYP5 Predicted protein | 713 | 4e-073 |
| Arabidopsis top hits (Blast detail) | Score | e value |
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| AT5G47180.1 vesicle-associated membrane family protein / VAMP family protein | 1008 | 1e-109 |
| AT5G47180.2 vesicle-associated membrane family protein / VAMP family protein | 1008 | 1e-109 |
| AT3G60600.1 VAP (VESICLE ASSOCIATED PROTEIN); protein binding | 356 | 5e-034 |
| AT3G60600.2 VAP (VESICLE ASSOCIATED PROTEIN); protein binding | 356 | 5e-034 |
| AT3G60600.3 VAP (VESICLE ASSOCIATED PROTEIN); protein binding | 356 | 5e-034 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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