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Information for unigene UN50435
| FASTA Sequence |
| Unigene ID: UN50435 | Length: 1077 |
SSR | | GGAACACAGCAGCGCAAAAGCAGAGAGGGGACGAAAAAGAAGGTTTCTCCCAAGAGAGAAAAAGCAACAACTCTCTCTCTCTCGCT
TTGATTTTGAGATTTCGAACTTCCCTCTTCCTGATTCAATCTCGAGAAAGGCATAGATGCAAAGTCTTCGGTTATTGGAATTGTGA
TAAAGAACACACAAAAAAAACAGAACATAATGGGAGGCTGCTGTTGTTGTTCTTCTTCACGAAGAGCCGATGTTGATAATGGACCT
CCCTACTATTACTATCCGAGAGCAACAGAAGAGCGTGTTCCTTTATCTTCCGCTCTCAACAGGACTTCCTCTACAATCTCCTCTGG
TGTTGTTGTAGTTGACACAAACTTGGAGACTTCATCTCCTGATGCTTATATACCACCGCCACTCCCTACTCCTTTCGATGTGGCTA
TAGGTGTTCCTCAAACACCAGAAATCCGTGAAGAGTCTGCTTGTGTTGATATAAGAGAAGTCTCAGTTGAAGCCGCTAATACTGAG
TCAGCTCAAGCAACAGTCGATGGTATCACTCTCGGGGTTCCAACTACAACATGCCCGTGTAAAGAAACAGAAACCAGACCACAGGC
AGAGATTGACCTTGAATCTACTGAAGATATAGACCCCAAGAAGCTATCGAAAGACGTCTTCGTACCGATAGAGGAAGAGGAGGATT
GTCCCATATGCTTGGAAGAGTATGATATGGATAACCCGAAACTTCTAGCCAAATGTGAGCACCATTTTCACCTGGCATGCATTCTA
GAATGGATGGAGAGAAGTGAAACTTGCCCCGTCTGCAACAAGGAAATGGTGTTTGACTCTCCCCTCGACTAGCAACCTGCAAGTAC
CCACAGCTTAGAACACTCGTTTCCCCTGAATCCCAAAAAAGAAAAACAAAACGAAGAAACATAAAAGAAAAGAAAAGATGGTAAGA
AAATACACAACAGTAACGTTCTTGATTCACAATTTGCAAATTACACGTTAGTGTTGATATATATAAATATGTATGCTTGTACAGAC
GTTTGAAGTCGTCTACAAAGACTATTAAAGATAAGAATTAGATGT
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002868602 zinc finger family protein [Arabidopsis lyrata subsp. lyrata] | 978 | 1e-103 |
| NP_568590 RING/U-box domain-containing protein [Arabidopsis thaliana] | 973 | 4e-103 |
| BAB08507 unnamed protein product [Arabidopsis thaliana] | 934 | 1e-098 |
| ADK63400 C3HC4 type zinc finger protein [Brassica rapa] | 871 | 3e-091 |
| ACU21148 unknown [Glycine max] | 555 | 1e-054 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q8LE94 E3 ubiquitin-protein ligase At3g02290 | 228 | 4e-018 |
| Q9ZT42 E3 ubiquitin-protein ligase RHF2A | 155 | 1e-009 |
| Q4TU14 E3 ubiquitin-protein ligase RHF1A | 147 | 1e-008 |
| O43164 E3 ubiquitin-protein ligase Praja-2 | 139 | 9e-008 |
| Q80U04 E3 ubiquitin-protein ligase Praja-2 | 139 | 9e-008 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q94AB7 AT5g41350/MYC6_6 | 973 | 3e-103 |
| Q9FN65 Genomic DNA, chromosome 5, P1 clone:MYC6 | 934 | 9e-099 |
| C6TH46 Putative uncharacterized protein | 555 | 8e-055 |
| B9GKF5 Predicted protein | 553 | 1e-054 |
| B9RCE8 Protein binding protein, putative | 551 | 2e-054 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT5G41350.1 zinc finger (C3HC4-type RING finger) family protein | 974 | 1e-105 |
| AT4G00335.1 RHB1A; protein binding / zinc ion binding | 242 | 9e-021 |
| AT4G00335.2 RHB1A; protein binding / zinc ion binding | 242 | 9e-021 |
| AT3G02290.1 zinc finger (C3HC4-type RING finger) family protein | 228 | 4e-019 |
| AT4G23450.1 zinc finger (C3HC4-type RING finger) family protein | 228 | 4e-019 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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