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Information for unigene UN50450
| FASTA Sequence |
| Unigene ID: UN50450 | Length: 944 |
SSR | | GGCTCCCCTTCCTTCTCAGCGCTTCCTTCTCTTCTCTCACAATCCTCGCTATGGCTTCTTCAATAGTAACCTCAAGCTTGAGGCCA
TTAGCCATGTCAGAAGAAGATGGGAGCTCATCATCGGTCGCCGTCGAGGAGAGCGACCCAGAAGAAGCCACGTTTTCCGAAGAGGA
AGGAGACGTGAGCGAAGGAGGAGGAGGAGGAGGCGACTTCCAGGAGCCACCGGAAGAAGCGAAACTCTTCGTCGGAAACTTGGCTT
ACGACGTTGATAGCCAGGCCTTGGCTATGCTCTTTGAGCAAGCCGGTACTGTTGAAATCGCCGAGGTTATATACAATAGAGAAACC
GACCAGAGCCGTGGGTTTGGATTTGTGACAATGAGTACAGTTGAAGAAGCTGAGACAGCTGTTGAGAAGTTTAACCGTTATGATTT
GAACGGAAGGCTTTTGACAGTAAACAAGGCAGCTCCCAAAGGATCACGTCCAGAACGCCAACCTCGGGTATACGAACCTGCATTCA
GAGTGTACGTTGGAAACCTACCGTGGGATGTGGACAGTGGTCGTCTAGAACAAGTTTTCAGCGAGCATGGCAAAGTTGTGGAAGCT
AAAGTGGTTTATGACCGTGAGACAGGTCGTTCACGTGGATTTGGTTTTGTGACAATGTCTAATGAGACTGGACTCAATGATGCCGT
CGCTGCTCTTGACGGACAGAACATGGAGGGTAGAGCTATCAGAGTAAATGTAGCGGAGGAGCGTCCAAGGCGTGGATTTTGAAGGG
ACTGAGAAGTTCTCTCCTGTGCCCTCTCTGTCTCTTGCATTTTGTCTAGAAGGGATTCATCACACTTTTGGTGATTTTTTTTTGTC
AGAACTCTGAATGCGAAGCTTCTTCTAAATTCTAATGTAATTTGTATCATCATTTCTCTTTGACGGTCTATCTAAATTTGTGTC
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002867645 RNA-binding protein cp31 [Arabidopsis lyrata subsp. lyrata] | 961 | 8e-102 |
| BAA06520 RNA-binding protein cp31 [Arabidopsis thaliana] | 906 | 2e-095 |
| BAA06521 RNA-binding protein cp31 [Arabidopsis thaliana] | 906 | 2e-095 |
| NP_194208 ribonucleoprotein [Arabidopsis thaliana] | 899 | 1e-094 |
| AAA18379 RNA-binding protein 2 [Arabidopsis thaliana] | 899 | 1e-094 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q04836 31 kDa ribonucleoprotein, chloroplastic | 899 | 6e-096 |
| P28644 28 kDa ribonucleoprotein, chloroplastic | 801 | 1e-084 |
| P19683 31 kDa ribonucleoprotein, chloroplastic | 774 | 2e-081 |
| P19682 28 kDa ribonucleoprotein, chloroplastic | 769 | 7e-081 |
| Q08935 29 kDa ribonucleoprotein A, chloroplastic | 508 | 1e-050 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q39209 RNA binding protein (Fragment) | 899 | 9e-095 |
| Q94EH5 AT4g24770/F22K18_30 | 895 | 3e-094 |
| B9RAR1 Ribonucleoprotein, chloroplast, putative | 841 | 5e-088 |
| Q8SMH8 RNA-binding protein | 825 | 3e-086 |
| Q9FGS0 AT5g50250/K6A12_11 | 823 | 6e-086 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT4G24770.1 RBP31 (31-KDA RNA BINDING PROTEIN); RNA binding / poly(U) binding | 900 | 4e-097 |
| AT5G50250.1 31 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein RNP-T, putative / RNA-binding protein 1/2/3, putative / RNA-binding protein cp31, putative | 823 | 3e-088 |
| AT1G60000.1 29 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein cp29, putative | 386 | 2e-037 |
| AT2G37220.1 29 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein cp29, putative | 255 | 2e-022 |
| AT3G53460.1 CP29; RNA binding / poly(U) binding | 254 | 3e-022 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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