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Information for unigene UN50451
| FASTA Sequence |
| Unigene ID: UN50451 | Length: 1108 |
SSR | | GATAGACCGTCAAAGAGAAATGATGATACAAATTACATTAGAATTTAGAAGAAGCTTCGCATTCAGAGTTCTGACAAAAAACAAAA
AAAAATCACCAAAAGTGTATGAACGCCGTCTAAACAAAATGCAAGAGACAGAGAGCACAGGAGAGAACTTCTGAGTCCCTTCAAAA
TCCACGCCTTGGACGCTCCTCCGCTACATTCACTCTGATCGCTCTACCCTCCATGTTCTGTCCGTCAAGAGCAGCGACGGCATCAT
TGAGTTCAGTCTCATTAGACATTGTCACAAAACCAAATCCACGTGAACGACCTGTCTCACGGTCATAAACCACTTTAGCTTCCACA
ACTTTGCCATGCTCACTGAAAACTTGTTCTAGACGACCACTGTCCACATCCCACGGTAGGTTTCCAACGTACACTCTGAATGCAGG
TTCGTATACTCGAGGTTGACGCTCTGGACGTGATCCTTTGGGAGCTGCCTTGTTTACTGTCAAAAGCCTTCCGTTCAAATCATAAC
GGTTGAACTTCTCAACAGCAGTTTCAGCTTCTTCAACTGTACTCATTGTCACAAATCCAAACCCACGACTCTGGTCGGTTTCCCTG
TTGTATATAACCTCGGCGATTTCAACAGTGCCGGCTTGCTCAAAGAGCATAGCCAAGGCCTGGCTATCAACGTCGTAAGCCAAGTT
TCCAACGAAGAGCTTCGCTTCTTCCGGTGGCTCCTGGAAGTCGCCTCCTCCTCCTCCTCCTCCTTCGCTCACGTCTCCTTCCCCTT
CAGAAAACGTGGCTTCCTCTGGCTCGCTCTCTTCGACGGCGACCGATGATGAGCTCCCATCTTCTTCCCCGGACCAGTCAGGAGTC
TCGGCGACTAAGGTAACGAAAGGTGACTTCTTTAGATGGGTTTTGGTTTTGAGAGAGAAGGAGAGAGGGAGATTAGTGCGTTTGGG
GAAGAAGGAGCAGCGGGTTTTGGAGGAGTGGATAGTGGAGACTGAAGGGTGGGAGAAGATAGTCGAAGAGGAGGATTCCGACATGG
CTAATGGCCTCAAGCTTGAGGTTATTATTGAAGAAGCCATTAGAGGGAGAATTGTGAGAGATAGAAGAAGGGAGTC
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002867645 RNA-binding protein cp31 [Arabidopsis lyrata subsp. lyrata] | 1202 | 1e-129 |
| BAA06520 RNA-binding protein cp31 [Arabidopsis thaliana] | 1029 | 1e-109 |
| BAA06521 RNA-binding protein cp31 [Arabidopsis thaliana] | 1024 | 5e-109 |
| CAA43420 RNA binding protein [Arabidopsis thaliana] | 911 | 7e-096 |
| NP_194208 ribonucleoprotein [Arabidopsis thaliana] | 907 | 2e-095 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q04836 31 kDa ribonucleoprotein, chloroplastic | 907 | 8e-097 |
| P28644 28 kDa ribonucleoprotein, chloroplastic | 819 | 1e-086 |
| P19683 31 kDa ribonucleoprotein, chloroplastic | 802 | 1e-084 |
| P19682 28 kDa ribonucleoprotein, chloroplastic | 769 | 8e-081 |
| Q08935 29 kDa ribonucleoprotein A, chloroplastic | 509 | 1e-050 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q39209 RNA binding protein (Fragment) | 911 | 5e-096 |
| Q94EH5 AT4g24770/F22K18_30 | 903 | 4e-095 |
| B9RAR1 Ribonucleoprotein, chloroplast, putative | 861 | 3e-090 |
| Q40270 RNA-binding protein | 852 | 3e-089 |
| B9IF14 Predicted protein | 851 | 4e-089 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT4G24770.1 RBP31 (31-KDA RNA BINDING PROTEIN); RNA binding / poly(U) binding | 908 | 6e-098 |
| AT5G50250.1 31 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein RNP-T, putative / RNA-binding protein 1/2/3, putative / RNA-binding protein cp31, putative | 826 | 2e-088 |
| AT3G52380.1 CP33; RNA binding | 420 | 2e-041 |
| AT1G60000.1 29 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein cp29, putative | 389 | 9e-038 |
| AT2G37220.1 29 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein cp29, putative | 262 | 5e-023 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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