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Information for unigene UN50454
| FASTA Sequence |
| Unigene ID: UN50454 | Length: 447 |
SSR | | GAGGCAGCACCAAGAGGGTCACGTCCAGAACGCCAACCTCGGGTGTATGAACCTGCGTTCAGAGTCTATGTGGGAAACCTACCGTG
GGATGTGGACAACGGTCGTCTAGAACAAGTTTTCAGTGAGCATGGTAAAGTTGTGGAAGCTCGTGTGGTTTATGACCGTGAGACAG
GTCGTTCACGTGGGTTCGGTTTTGTCACAATGTCTAACGAGACTGAACTCAACGACGCTATTGCTGCTCTCGATGGACAGAACATG
GAGGGTAGAGCAATCAGAGTGAACGTAGCGGAGGAGCGTCCGAGGCGCGGGTTTTAAAAGGATTGAGATTATCTCTTCTGCCAGTT
TCCTCTCTCTCTCTCTTTTATCGCTTTGCATTTTGTTTAGACGAGATTCTTACGCTCTGATGATTTTTTTTGTTGTGTCCGAACAC
CTTTGATGATTTTTTGT
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| GenBank top hits (Blast detail) | Score | e value |
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| XP_002867645 RNA-binding protein cp31 [Arabidopsis lyrata subsp. lyrata] | 527 | 3e-052 |
| XP_002865780 hypothetical protein ARALYDRAFT_918033 [Arabidopsis lyrata subsp. lyrata] | 492 | 3e-048 |
| BAA06520 RNA-binding protein cp31 [Arabidopsis thaliana] | 486 | 1e-047 |
| BAA06521 RNA-binding protein cp31 [Arabidopsis thaliana] | 486 | 1e-047 |
| NP_194208 ribonucleoprotein [Arabidopsis thaliana] | 486 | 1e-047 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
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| Q04836 31 kDa ribonucleoprotein, chloroplastic | 486 | 1e-048 |
| P19682 28 kDa ribonucleoprotein, chloroplastic | 427 | 7e-042 |
| P28644 28 kDa ribonucleoprotein, chloroplastic | 421 | 3e-041 |
| P19683 31 kDa ribonucleoprotein, chloroplastic | 403 | 4e-039 |
| Q08937 29 kDa ribonucleoprotein B, chloroplastic | 288 | 9e-026 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q39209 RNA binding protein (Fragment) | 486 | 1e-047 |
| Q94EH5 AT4g24770/F22K18_30 | 482 | 3e-047 |
| B9RAR1 Ribonucleoprotein, chloroplast, putative | 477 | 1e-046 |
| B9I3I8 Predicted protein | 465 | 3e-045 |
| A5B9G1 Putative uncharacterized protein | 459 | 1e-044 |
| Arabidopsis top hits (Blast detail) | Score | e value |
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| AT4G24770.1 RBP31 (31-KDA RNA BINDING PROTEIN); RNA binding / poly(U) binding | 487 | 8e-050 |
| AT5G50250.1 31 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein RNP-T, putative / RNA-binding protein 1/2/3, putative / RNA-binding protein cp31, putative | 452 | 1e-045 |
| AT2G37220.1 29 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein cp29, putative | 267 | 3e-024 |
| AT3G53460.1 CP29; RNA binding / poly(U) binding | 266 | 4e-024 |
| AT3G53460.2 CP29; RNA binding / poly(U) binding | 266 | 4e-024 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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