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Information for unigene UN50456
| FASTA Sequence |
| Unigene ID: UN50456 | Length: 1199 |
SSR | | TTTTTTTGGTCTTGCTGTCTGGCCCTCCTTATCCCTATCTTTCGCGCACCGTTCTAAACCCTCCCCTTCCTTCCCAGCGCTTCCTT
CTCTTCTCTCACAATCCTCGCTATGGCTTCTTCAATGGTAACCTCAAGCTTGAGGCCATTAGCCATGTCAGAATCCTCCTCCTCGA
CTATCTTCTCCCACCCTTCATTCTCCACTATCCACTCCTCCAAAACCCGCTGCTCCTTCCTCGCCAAAGGCACTAACCTCTCCCGC
TTCTCCCTCTCTCTTAAATCCAAAACCCATCTAAAGAAGTCACCTTTCGTTACCTTAGTCGCCGAGACTTCGGATTGGTCCGGGGA
AGAAGATGGGAGCTCATCATCGGTCGCCGTCGAGGAGAGCGACCCAGAAGAAGCCACGTTTTCCGAAGAGGAAGGAGACGTGAGCG
AAGGAGGAGGAGGAGGAGGCGACTTCCAGGAGCCACCGGAAGAAGCGAAACTCTTCGTCGGAAACTTGGCTTACGACGTTGATAGC
CAGGCCTTGGCTATGCTCTTTGAGCAAGCCGGTACTGTTGAAATCGCCGAGGTTATATACAATAGAGAAACCGACCAGAGCCGTGG
GTTTGGATTTGTGACAATGAGTACAGTTGAAGAAGCTGAGACAGCTGTTGAGAAGTTTAACCGTTATGATTTGAACGGAAGGCTTT
TGACAGTAAACAAGGCAGCTCCCAAAGGATCACGTCCAGAACGCCAACCTCGGGTATACGAACCTGCATTCAGAGTGTACGTTGGA
AACCTACCGTGGGATGTGGACAGTGGTCGTCTAGAACAAGTTTTCAGCGAGCATGGCAAAGTTGTGGAAGCTAAAGTGGTTTATGA
CCGTGAGACAGGTCGTTCACGTGGATTTGGTTTTGTGACAATGTCTAATGAGACTGAACTCAATGATGCCGTCGCTGCTCTTGACG
GACAGAACATGGAGGGTAGAGCTATAGAGTAAATGTAGCGGAGGAGCGTCCAAGGCGTGGATTTTGAAGGGACTGAGAAGTTCTCT
CCTGTGCCCTCTCTGTCTCTTGCATTTTGTCTAGAAGGGATTCATCACACTTTTGGTGATTTTTTTTTTTGTCAGAACTCTGAATG
CGAAGCTTCTTCTAAATTCTAATGTAATTTGTATTATCATTTCTCTTTGACGGTCTATCTAAATTTGTGTCATGCCTTGCC
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002867645 RNA-binding protein cp31 [Arabidopsis lyrata subsp. lyrata] | 1141 | 2e-122 |
| BAA06520 RNA-binding protein cp31 [Arabidopsis thaliana] | 981 | 6e-104 |
| BAA06521 RNA-binding protein cp31 [Arabidopsis thaliana] | 974 | 4e-103 |
| NP_194208 ribonucleoprotein [Arabidopsis thaliana] | 850 | 9e-089 |
| AAK95304 AT4g24770/F22K18_30 [Arabidopsis thaliana] | 850 | 9e-089 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q04836 31 kDa ribonucleoprotein, chloroplastic | 850 | 4e-090 |
| P28644 28 kDa ribonucleoprotein, chloroplastic | 766 | 2e-080 |
| P19683 31 kDa ribonucleoprotein, chloroplastic | 756 | 3e-079 |
| P19682 28 kDa ribonucleoprotein, chloroplastic | 721 | 3e-075 |
| Q08935 29 kDa ribonucleoprotein A, chloroplastic | 484 | 1e-047 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q94EH5 AT4g24770/F22K18_30 | 850 | 6e-089 |
| Q39209 RNA binding protein (Fragment) | 849 | 8e-089 |
| B9RAR1 Ribonucleoprotein, chloroplast, putative | 806 | 8e-084 |
| B9IF14 Predicted protein | 802 | 2e-083 |
| Q8SMH8 RNA-binding protein | 792 | 3e-082 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT4G24770.1 RBP31 (31-KDA RNA BINDING PROTEIN); RNA binding / poly(U) binding | 850 | 3e-091 |
| AT5G50250.1 31 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein RNP-T, putative / RNA-binding protein 1/2/3, putative / RNA-binding protein cp31, putative | 782 | 3e-083 |
| AT3G52380.1 CP33; RNA binding | 382 | 6e-037 |
| AT1G60000.1 29 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein cp29, putative | 369 | 2e-035 |
| AT2G37220.1 29 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein cp29, putative | 258 | 1e-022 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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