 |
Information for unigene UN50465
| FASTA Sequence |
| Unigene ID: UN50465 | Length: 782 |
SSR | | GGCCAATCCTTACGGTGAACTGTCTCCCTCTCTCTCTTTAGCTATTGATTGTTGATTTCTCTCTCACACACACACACCTAACCTTA
TCATTTCACCTGAAACTCTTCCACGATCCAGGCCATGACTACGGAGGAAGCTAAGGTCGTCGTTCCGAGGAACTTTAGATTGTTGG
AGGAGCTAGAGAGAGGTGAGAAAGGGATCGGAGATGGTACGGTAAGCTATGGAATGGACGATGCTGATGACATCTATATGCAGTCC
TGGACTGGCACCATTCTCGGCCCTCACAATACTGCATACGAAGGGAAAATCTTCCAGCTGAAGCTCTTCTGTGGCAAGGAATACCC
TGAAAGTCCACCAACTGTCAGGTTCCAGACCCGGATCAACATGGCTTGTGTCAACCCTGAAACTGGAGTGGTTGAACCGAGCCTCT
TCCCTATGCTCGCAAACTGGAGGCGAGAATACACAATGGAGGACATTCTGTTTAAGCTGAAAAAAAGAAATGATGACTTCCCATAA
CCGCAATCTAGCTCAACCCCCGGAAGGTACCGAGGAAGCTAGGGCAGATCCAAAGGGACCAGCTAAATGTTGTGTGATGTGAAGAG
AGAGAGAGAGAGAGAGAGAAGTTGGAGGGAACCACGGTCAATTTGTATTGATAGAAGGGATAATGTATATATAAAACATCATTTGA
AGCTTTTGATATTTGCCTATGACTTGAATGTTATGCTGTTTGTTTGAGATTCTATCTATATATGTCCACCAAAAAATAGGTGAATT
ATGACCCT
|
|
|
| GenBank top hits (Blast detail) | Score | e value |
|---|
| NP_564191 ubiquitin-conjugating enzyme E2 variant 1A [Arabidopsis thaliana] | 639 | 1e-064 |
| XP_002893271 hypothetical protein ARALYDRAFT_889865 [Arabidopsis lyrata subsp. lyrata] | 631 | 1e-063 |
| AAM65883 E2, ubiquitin-conjugating enzyme, putative [Arabidopsis thaliana] | 604 | 1e-060 |
| NP_564994 ubiquitin-conjugating enzyme E2 variant 1B [Arabidopsis thaliana] | 603 | 2e-060 |
| XP_002887321 hypothetical protein ARALYDRAFT_476195 [Arabidopsis lyrata subsp. lyrata] | 603 | 2e-060 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q93YP0 Ubiquitin-conjugating enzyme E2 variant 1A | 639 | 6e-066 |
| Q9CAB6 Ubiquitin-conjugating enzyme E2 variant 1B | 603 | 9e-062 |
| Q9SVD7 Ubiquitin-conjugating enzyme E2 variant 1D | 537 | 4e-054 |
| Q9SJ44 Ubiquitin-conjugating enzyme E2 variant 1C | 518 | 6e-052 |
| Q54D06 Probable ubiquitin-conjugating enzyme E2 variant | 373 | 4e-035 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| B3TM02 Ubiquitin-conjugating enzyme 2 | 576 | 2e-057 |
| B9HW26 Predicted protein | 572 | 5e-057 |
| B9SJ18 Ubiquitin-conjugating enzyme, putative | 571 | 7e-057 |
| B9HJF6 Predicted protein | 559 | 2e-055 |
| C6T394 Putative uncharacterized protein | 559 | 2e-055 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT1G23260.1 MMZ1 (MMS ZWEI HOMOLOGUE 1); protein binding / ubiquitin-protein ligase | 639 | 5e-067 |
| AT1G70660.1 MMZ2 (MMS ZWEI HOMOLOGE 2); protein binding / ubiquitin-protein ligase | 603 | 8e-063 |
| AT3G52560.1 UEV1D-4 (UBIQUITIN E2 VARIANT 1D-4); protein binding / ubiquitin-protein ligase | 537 | 4e-055 |
| AT3G52560.2 UEV1D-4 (UBIQUITIN E2 VARIANT 1D-4); protein binding / ubiquitin-protein ligase | 525 | 9e-054 |
| AT2G36060.1 ubiquitin-conjugating enzyme family protein | 518 | 6e-053 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
|
|
|
|
