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Information for unigene UN50480
| FASTA Sequence |
| Unigene ID: UN50480 | Length: 518 |
SSR | | GCGTTGAGAGAGAGAGAGAATTCAAACGTCGGCAGCGATGGCGAGCACCAAAGTTCAGAGGATTATGACCCAACCTATCAACTTGA
TTTTTAGGTTTCTTCAAAGTAAAGCTAGGATCCAGATTTGGCTTTTTGAGCAGAAAGATCTCAGGATTGAAGGAAGGATTACTGGT
TTTGACGAGTACATGAACCTAGTGTTGGATGAAGCTGAAGAAGTTAGCATCAAGAAGAACACCAGGAAACCACTTGGAAGGATTCT
ACTCAAAGGAGACAACATCACTCTGATGATGAACACGGGAAAGTAATGTCTGCTCTCAACAAACTCTCTCGTGGATTAGTAGATTT
GCTTTTCGACTATCTCCAAAGCTTTTACTAAATGTATGTTGAGTTTAGTTCTTCAATTATCTGATAATGCCTTCTTCTCTTCATGA
TCGTCTAATGCTGCAATGTAGTGACAAGTTTGAGAAATTATGGAACTTGGTTGAATCTTATGGATGGTATTGTCCCTTTTAGTTTC
AT
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| NP_179464 putative small nuclear ribonucleoprotein [Arabidopsis thaliana] | 441 | 4e-042 |
| NP_567844 small nuclear ribonucleoprotein E [Arabidopsis thaliana] | 430 | 8e-041 |
| CAB81026 small nuclear ribonucleoprotein homolog [Arabidopsis thaliana] | 419 | 1e-039 |
| XP_002454946 hypothetical protein SORBIDRAFT_03g001950 [Sorghum bicolor] | 419 | 1e-039 |
| NP_001045754 Os02g0126700 [Oryza sativa Japonica Group] | 418 | 2e-039 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q7ZUG0 Small nuclear ribonucleoprotein E | 306 | 1e-027 |
| Q9VLV5 Probable small nuclear ribonucleoprotein E | 301 | 4e-027 |
| A4FUI2 Small nuclear ribonucleoprotein E | 300 | 5e-027 |
| P62303 Small nuclear ribonucleoprotein E | 300 | 5e-027 |
| P62304 Small nuclear ribonucleoprotein E | 300 | 5e-027 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q9ZV45 Putative small nuclear ribonucleoprotein E | 441 | 3e-042 |
| Q8LAK5 At4g30330 | 430 | 6e-041 |
| C5XL26 Putative uncharacterized protein Sb03g001950 | 419 | 1e-039 |
| Q9M0C7 Small nuclear ribonucleoprotein homolog | 419 | 1e-039 |
| B8AGZ5 Putative uncharacterized protein | 418 | 1e-039 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT2G18740.1 small nuclear ribonucleoprotein E, putative / snRNP-E, putative / Sm protein E, putative | 442 | 2e-044 |
| AT4G30330.1 small nuclear ribonucleoprotein E, putative / snRNP-E, putative / Sm protein E, putative | 431 | 4e-043 |
| AT2G18740.2 small nuclear ribonucleoprotein E, putative / snRNP-E, putative / Sm protein E, putative | 356 | 2e-034 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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