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Information for unigene UN50588

FASTA Sequence
Unigene ID: UN50588Length: 1044 SSR 
AGAGGAACCTTTTCTACAACAAGCCTCAACCTTCTTCTTCAATCAAATCAATCGCATCCGCTTTTTCCTGATTCTCCGTCGACGAA
ATACGATTCCGTTGTTGATCGATGAACTTGTCAAGGCGACTGGCTCTGTTAGGAGCTCAATCCGCGCTCTCAATCGCCAGACCCCG
AGGAGGTCTGGGCTCCTCCTCCTCCTCCTACGGCTTAATTGATCGGCGTCCCTTCCAGTTCCGGCAAATCTCGGAGCTAACCAAAG
TCAATGGGAAGCGTGCTTTTCTCGTCGATACCTTGGCTCTGGTGAGGAGTCTTGAAGCACAAGGTGTTCCATCGAAACAAGCTGAG
GCCATTACTTCTGCCATCACTGAGGTTTTGAATGATAGCTTGGAGAACGTCTCCGAGTCCTTTGTTTCCAAGGCTGAGATGCAGAA
GATTGAAATGCTCCAAGATTCTAACCTCTCCAAATTTAAATCTGAAGTCAAAAGCTCTCAGGAGCATCATTTTACTGTTTTACAAC
GCGAGACAGAAAAACTAAGAGGGGATATAGAGAAGATGAGAAGCGAGCTAAGGTATGAAATTGATAAGGTCACAGCTGGACAACGC
TTGGATTTGAATCTTGAAAGAGGCCGGATACGTGATGAGCTAGCTAATCAGAATTCAGAAACAACAAACCTCACGAACAAGCTTGA
CAGAGAAATTCATGCATTGAGAGCTCAACTAGAAGCGGCCAAATACGAAGTAATCAAATACTGCATTGGTACACTTGTCTCCATTT
CAGCAGTTGGACTCGCAGTCCTTCGCATAATGATGTAGTTGAATCTAACCCTCAAGACTTATATGCTCAAAACAAAAGTTGGTAGA
TTCTCATTTTTTTTACTTGAAACCTCAGCGTCATATTCTTTTTTTCTTTTCTGGCGAGGAAAAGGGAGAAAAAAACAATGTTATTG
TAATCGTGATCTCTTGGGCTAATTATCCTTGCTAGAACAGGTTTTGAATTTGCCGCGAGTATTATATTCAATCCAAGAATCGTTGG
TTTCTTATTACC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
NP_565388 uncharacterized protein [Arabidopsis thaliana]10147e-108
XP_002886229 hypothetical protein ARALYDRAFT_900313 [Arabidopsis lyrata subsp. lyrata]9985e-106
XP_002313013 predicted protein [Populus trichocarpa]8533e-089
XP_002533806 conserved hypothetical protein [Ricinus communis]8292e-086
NP_001058564 Os06g0713100 [Oryza sativa Japonica Group]8141e-084

Swiss-Prot top hits (Blast detail)Scoree value
P43557 Protein FMP32, mitochondrial2438e-020
Q4V897 Coiled-coil domain-containing protein 90B, mitochondrial2052e-015
Q9GZT6 Coiled-coil domain-containing protein 90B, mitochondrial2043e-015
Q8C3X2 Coiled-coil domain-containing protein 90B, mitochondrial2024e-015
Q6DJ87 Coiled-coil domain-containing protein 90B, mitochondrial1953e-014

TrEMBL top hits (Blast detail)Scoree value
Q9SIV6 Expressed protein10145e-108
B9HRG4 Predicted protein8532e-089
B9T6D7 Putative uncharacterized protein8291e-086
B8B2H5 Putative uncharacterized protein8147e-085
Q5Z5X5 Os06g0713100 protein8147e-085

Arabidopsis top hits (Blast detail)Scoree value
AT2G16460.1 metal ion binding10286e-112
AT3G51090.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1640 (InterPro:IPR012439); BEST Arabidopsis thaliana protein match is: metal ion binding (TAIR:AT2G16460.1); Has 369 Blast hits to 367 proteins in 118 species: Archae - 2; Bacteria - 7; Metazoa - 171; Fungi - 104; Plants - 48; Viruses - 2; Other Eukaryotes - 35 (source: NCBI BLink).7813e-083
AT2G16460.2 metal ion binding7437e-079

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
84  67%
 
62  33%

Unigene MembersMember information