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Information for unigene UN50659
| FASTA Sequence |
| Unigene ID: UN50659 | Length: 983 |
SSR | | CAATACAAAACTTTCCAAGTTTTATTATGCAATCAGAACGATCCTCAGAAAAAAAGATAATTATTTCTCATTAAACAAGCTACTCA
TTTCCCCAGAGAAAAAAATAACTTAAAAACATTGCAGATATAGATAGAAAGATAGATGGGGGACAAGAGATACACATGTGACATGT
GCAACTTCATTACACCATGAGGCCCTCAGGTGCAGCAGCAGCAGCAGCCTTAGGTTTAGGCTTATCAACAACGATAGCCTGAGTGG
TCAGCACCATCCCTGCAACCGAAGCAGCGTTCTGAAGCGCACATCTGGTCACTTTAGCTGGATCAATCACTCCAGCTTCCAACAGA
TTCTCATAGGTATCAGTCATGGCGTTGTACCCTAGCTCCCATTCACTGAACATAATCTTCTCCACCACAACTTCTCCTTCAATCCC
AGCGTTCTGCGCAATAAGCGCTGCTGGTGCCACCAATGCCTTCTGTACTATATCAGCTCCAAGACGTTCATCAGCGTCCTCAAACG
TCTCCTTAATGGCAGGGATAACAGTGGAGAGATGCACCAGAGTCGCACCACCACCGGGGACTATCCCTTCCTCGATAGCAGCAAAG
GTCGCGTTCTTTGCGTCCTCGATACGAAGCTTACGGTCCTCGAGCTCGGTTTCAGTCGCTGCTCCGACTTTAATGACGGCAACACC
ACCAGAGAGTTTGGCTATTCTCTCAGCGAGCTTCTCCGAGTCGTACACAGAGTCAGTCTCGAACAGTTCCTTCTTCAGCTGGGAGA
TACGAGCTTGCAACTCGTCTTTGGGAGCCGCATCTGCGATCAGCGTAGTCGAGTCTTTGCTTATGGTCACTTTACGTGCAATACCC
AACTGATCTATGGTTGTGTTTTCCACCAGCAGGCCCATGTCAAGGGCTTGGTACTCAGCTCCTGTCAAGATTGCGATATCTTGAAG
CATAGCTTTCCTCCTTTCTCCAAACCCTGGAGCTTTC
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| P21239 RecName: Full=RuBisCO large subunit-binding protein subunit alpha, chloroplastic; AltName: Full=60 kDa chaperonin subunit alpha; AltName: Full=CPN-60 alpha; Flags: Precursor | 1247 | 6e-135 |
| NP_180367 chaperonin-60alpha [Arabidopsis thaliana] | 1235 | 1e-133 |
| AAM63618 putative rubisco subunit binding-protein alpha subunit [Arabidopsis thaliana] | 1235 | 1e-133 |
| BAD95121 putative rubisco subunit binding-protein alpha subunit [Arabidopsis thaliana] | 1228 | 1e-132 |
| XP_002880957 CPN60A [Arabidopsis lyrata subsp. lyrata] | 1228 | 1e-132 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| P21239 RuBisCO large subunit-binding protein subunit alpha, chloroplastic (Fragment) | 1247 | 3e-136 |
| P21238 RuBisCO large subunit-binding protein subunit alpha, chloroplastic | 1235 | 7e-135 |
| P34794 RuBisCO large subunit-binding protein subunit alpha, chloroplastic | 1189 | 1e-129 |
| P08926 RuBisCO large subunit-binding protein subunit alpha, chloroplastic | 1169 | 3e-127 |
| P08823 RuBisCO large subunit-binding protein subunit alpha, chloroplastic (Fragment) | 1081 | 5e-117 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q8L5U4 Putative rubisco subunit binding-protein alpha subunit | 1235 | 1e-133 |
| Q56WB8 Putative rubisco subunit binding-protein alpha subunit (Fragment) | 1228 | 7e-133 |
| B9HQD5 Predicted protein | 1155 | 2e-124 |
| Q2PEP1 Putative rubisco subunit binding-protein alpha subunit | 1154 | 3e-124 |
| Q2PEP8 Putative rubisco subunit binding-protein alpha subunit (Fragment) | 1154 | 3e-124 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT2G28000.1 CPN60A (CHAPERONIN-60ALPHA); ATP binding / protein binding | 1236 | 4e-136 |
| AT5G18820.1 EMB3007 (embryo defective 3007); ATP binding / protein binding | 791 | 2e-084 |
| AT5G56500.1 ATP binding / protein binding | 650 | 4e-068 |
| AT5G56500.2 ATP binding / protein binding | 650 | 4e-068 |
| AT3G13470.1 chaperonin, putative | 647 | 9e-068 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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