RadishBase

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Information for unigene UN50665

FASTA Sequence

Unigene ID: UN50665	Length: 1055	SSR
ATTAAAACTCGTCTGTTAAAAGTACAAAAAGGTTTCCAGCAGTCTTAAAAAAAAGCATTAAGAGACTAGTCTAATAGAGGAAGTAC AACAACAACACACCAAGAACTCATCCCTTTCTCTTACTTAAAATCCCACTTGGCCTCACTTCAAATGACCCACCAAGGCTGCATTT GATGCTAGACTCTTTTTTTTTGTCTCTACCAATAAATCTTGATCATTTTTCTTTAAAGATGAGGTCACAATAAAACACAAAGACTC TTATTCAATTTCTTCTTCTTTTGATTCGGTGGCTGAAGCCCCATTTTTATAGCTGCGTCAAAAACTGCTTTAACGTTCTGCTGAGT CTTTGAACTACACTCAATGTAAACCGGAGATCCTATCAGTTTCTTTAGTTCTTCTCCCTGGTTTGTAGTAATCGGCACTGCACCAG GATGGTCTATGAAGAACTGCTTGTCATCTCGAAGATCGAGTTTTGTTCCAACGAGGATAATAGGAACTCCAGGGGCATAATGCCTG AGCTCAGGAATCCACTTCTTGGCTATGTTCTCGTAGCTAGCTTTGCTAATAAGAGAGAAAGCAAGAATGAAGACATCTGCACCACG GTAACTCAATGGTCTTAACCTGTTATAGTCTTCTTGACCGGCTGTATCCCACAATCCAAGATTCACAGTGTTCCCATCTACAACGA CATTAGCACTGAAGTTGTCGAAAACAGTTGGAACATAGTCCGTAGGGAAAGTGTTGCTGGTGTAAGAAATCAGCATACATGTTTTT CCGACAGCACCATCGCCGACTGTGACACACTTTATGAACCTCGAAGCGCTCATCTCCGCCGCAAATTTCAAAATAAAAAAGGGACA AATGAAAGTCTTCTTCTTCTTCTTCCTCAAATCTCAGCCATTACCAAAAATCAAGATACAACCTTTCCCCTAACTGACACACTAGT TTCTTTCTTTAAGAATTGATTCTTTAATCCACTAATGACCATGTATAGTATGAAAATTCCAAAAGCAAGATGACAGGAAATAAATT GATATTATGATTTTTTTGTTCCC

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
NP_177712 Rac-like GTP-binding protein ARAC5 [Arabidopsis thaliana]	981	5e-104
AAC78242 Rho-like GTP binding protein [Arabidopsis thaliana]	972	5e-103
XP_002890370 hypothetical protein ARALYDRAFT_472235 [Arabidopsis lyrata subsp. lyrata]	968	2e-102
NP_173437 Rac-like GTP-binding protein ARAC4 [Arabidopsis thaliana]	962	8e-102
AAD00114 ATGP3 [Arabidopsis thaliana]	950	2e-100

Swiss-Prot top hits (Blast detail)	Score	e value
Q38937 Rac-like GTP-binding protein ARAC5	981	2e-105
Q38919 Rac-like GTP-binding protein ARAC4	962	3e-103
O04369 Rac-like GTP-binding protein RAC1	916	7e-098
Q38912 Rac-like GTP-binding protein ARAC3	916	7e-098
Q6EP31 Rac-like GTP-binding protein 5	915	9e-098

TrEMBL top hits (Blast detail)	Score	e value
Q0WU07 RAC-like GTP-binding protein ARAC4	962	5e-102
B9GQS4 Predicted protein	942	1e-099
A5AP72 Putative uncharacterized protein	933	1e-098
A5CAU5 Putative uncharacterized protein	933	1e-098
B5U2V7 Rac-like small GTP-binding protein	933	1e-098

Arabidopsis top hits (Blast detail)	Score	e value
AT1G75840.1 ARAC5 (RAC-LIKE GTP BINDING PROTEIN 5); GTP binding / GTPase	982	1e-106
AT1G20090.1 ROP2 (RHO-RELATED PROTEIN FROM PLANTS 2); GTP binding	963	2e-104
AT4G35020.1 ARAC3 (ARABIDOPSIS RAC-LIKE 3); GTP binding / GTPase	916	6e-099
AT2G17800.1 ARAC1; GTP binding	909	4e-098
AT2G17800.2 ARAC1; GTP binding	909	4e-098

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


8	2			67%


7	1			33%

Unigene Members	Member information