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Information for unigene UN50769
| FASTA Sequence |
| Unigene ID: UN50769 | Length: 591 |
SSR | | GGACATCAACAAAACCCTAAACCCATTTGCACACTCTCTCTCTCTCAACAGTCCCACCGTTCTTCTCCAAATTCTCCGACGGGCGA
CGATTGATATAGGATAGCGAGGATGACGCTAGGGTTGTTATCGGCGATTGGAAGATCTTTTCGGCGGAAGAGAGCGTCGTCGCTTG
ATATTCTCTCTCCCAAACGAGCTCCAAGAAACTTCTACAAGGGCAAAAACTGCAAATCTACTGGTTTCAACACCTCAAAAGGAGGA
TATGTTGTGCAGCAAGATAAATTGCCAAACTACGTAATCCCTGATCTGACGGGCTTTAAGCTGAAACCATGTGTATCTCAGTGTCC
TGTAGAGGTCAACAAAACTACTGGGTCAACTGAAGCTTCCAAGTGAATAAGTCAGAAGAAATATGTTCCGGGTCTTATTAAGCTTG
AGCAGTGTGTTCTGAGAAATTCGTCTTCTATTTCTTTAGTCCTTTTTTGTTTTTACAAGGACTTCAAGCAATTTATCACAACTTTT
AGGTTATGATACATATAAGGATTGCTTCAGAGCGCCATCGATCCAAATTTCCCATTGCTCTCCACTCCAGTTTCC
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002872362 predicted protein [Arabidopsis lyrata subsp. lyrata] | 406 | 7e-038 |
| NP_001118953 Mitochondrial ribosomal protein L27 [Arabidopsis thaliana] | 392 | 3e-036 |
| NP_198824 Mitochondrial ribosomal protein L27 [Arabidopsis thaliana] | 382 | 4e-035 |
| NP_568574 Mitochondrial ribosomal protein L27 [Arabidopsis thaliana] | 381 | 6e-035 |
| AAM63883 unknown [Arabidopsis thaliana] | 379 | 1e-034 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q6DJI4 39S ribosomal protein L41-A, mitochondrial | 140 | 3e-008 |
| Q8IXM3 39S ribosomal protein L41, mitochondrial | 139 | 3e-008 |
| Q6INF3 39S ribosomal protein L41-B, mitochondrial | 137 | 6e-008 |
| Q9CQN7 39S ribosomal protein L41, mitochondrial | 136 | 8e-008 |
| Q5BJX1 39S ribosomal protein L41, mitochondrial | 127 | 8e-007 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| B3H7J5 Uncharacterized protein At4g09012.1 | 390 | 4e-036 |
| Q9LUJ9 At5g40080 | 382 | 3e-035 |
| Q8GXS6 Putative uncharacterized protein At5g39800 | 381 | 4e-035 |
| Q8LC32 Putative uncharacterized protein | 379 | 7e-035 |
| Q9FIW7 Genomic DNA, chromosome 5, P1 clone:MKM21 | 368 | 1e-033 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT4G09012.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; BEST Arabidopsis thaliana protein match is: 60S ribosomal protein-related (TAIR:AT5G40080.1); Has 124 Blast hits to 124 proteins in 48 species: Archae - 0; Bacteria - 0; Metazoa - 65; Fungi - 23; Plants - 25; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink). | 391 | 2e-038 |
| AT5G40080.1 60S ribosomal protein-related | 387 | 6e-038 |
| AT5G39800.1 60S ribosomal protein-related | 386 | 7e-038 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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