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Information for unigene UN50786
| FASTA Sequence |
| Unigene ID: UN50786 | Length: 1028 |
SSR | | TGTTCAATGGCTTCTTCAGTGACTCCTCTAGGTCCATGGGTTCTTCACCATCACCACCCTTCAACTATCATTACCCAATCCAAAAC
ACCCAGATCCAGATCTCATTCCCTCGTCACCCTTAAACCCATCTCCCTCACTCCAAAACGCACCGTTTCGTACACCGTTTCCTCTT
CCCTCGTCACCAAAGAAGACAACAACCTCAAATCCACCACCACCACCACCTCTTCCTCCTTCGATTTCATGTCTTACATCCTCCGC
AAAGCCGAGTCCGTCAACAGAGCCCTCGACTCCGCCGTGCCTCTCCGCTTCTCTCGTTCGCCTTCGAGCATTTAGCAACTGCCACG
AGCTCGGAGGTTTCTCCGGCGAGAGTGGTCAGAGCTGTGGGAGAGTTGGCGAAAGCCATCGGCACGGAAGGGCTCGTGGCTGGACA
GGTGGTGGATATAAGCAGCGAAGGTTTGGACCTAAACGACGTCGGATTGGATCATCTGGAGTATATACATTTGCATAAAACGGCGG
CGTTGCTTGAGGCTTCCGCGGTTTTGGGTGGGATCGTAGGTGGAGGGAGCGATGAAGAGATCGAGAGGCTGAGGAAGTTCGCGAGG
TGTATCGGTTTGTTGTTTCAGGTGGTTGATGATATCTTGGACGTCACGAAATCGTCTCAAGAGCTGGGGAAAACCGCTGGGAAAGA
TTTGATTGCTGATAAGTTGACGTATCCGAAGCTCATGGGTTTGGAGAAATCGAGAGAGTTCGCTGAGAAGTTGAATAGAGAGGCGC
GTGATCAGCTTTTAGGGTTTGATTCCGACAAGGTTGCTCCTTTGTTGGCTTTGGCTAATTACATTGCGAATAGACAGAACTGAGTG
TTGTGTTCTTTTTTCTTTAGTTCTTGTCGGAATTATTCTCTATCTGGGCTTGTTTCGGATCGAATTGTAGAAATATTGGAGAGATG
CTAAAACAGATCTCTTGCGTGTTAGTAATGATTGCTATGTTATAGATTTAATATTTAAGAGATCAGTGATTTTAGTTTCTGT
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| GenBank top hits (Blast detail) | Score | e value |
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| Q43133 RecName: Full=Geranylgeranyl pyrophosphate synthase, chloroplastic/chromoplastic; Short=GGPP synthase; Short=GGPS; AltName: Full=(2E,6E)-farnesyl diphosphate synthase; AltName: Full=Dimethylallyltranstransferase; AltName: Full=Farnesyl diphosphate synthase; AltName: Full=Farnesyltranstransferase; AltName: Full=Geranyltranstransferase; Flags: Precursor | 874 | 1e-091 |
| NP_195399 geranylgeranyl pyrophosphate synthase 11 [Arabidopsis thaliana] | 847 | 2e-088 |
| AAA32797 geranylgeranyl pyrophosphate synthase [Arabidopsis thaliana] | 844 | 3e-088 |
| XP_002869021 hypothetical protein ARALYDRAFT_490952 [Arabidopsis lyrata subsp. lyrata] | 831 | 1e-086 |
| AAM65107 geranylgeranyl pyrophosphate synthase [Arabidopsis thaliana] | 830 | 1e-086 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
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| Q43133 Geranylgeranyl pyrophosphate synthase, chloroplastic/chromoplastic | 874 | 5e-093 |
| P34802 Geranylgeranyl pyrophosphate synthase 1, chloroplastic | 847 | 7e-090 |
| Q42698 Geranylgeranyl pyrophosphate synthase, chloroplastic | 701 | 6e-073 |
| Q94ID7 Geranylgeranyl pyrophosphate synthase, chloroplastic | 687 | 2e-071 |
| Q9LUD9 Geranylgeranyl pyrophosphate synthase 3, chloroplastic | 664 | 1e-068 |
| TrEMBL top hits (Blast detail) | Score | e value |
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| Q0WUL9 Geranylgeranyl pyrophosphate synthase | 847 | 1e-088 |
| Q8LAW5 Geranylgeranyl pyrophosphate synthase | 830 | 1e-086 |
| A0MEM7 Putative uncharacterized protein (Fragment) | 730 | 4e-075 |
| Q9ZU77 Geranylgeranyl pyrophosphate synthase/GGPP synthetase/farnesyltranstransferase | 730 | 4e-075 |
| A5AX87 Putative uncharacterized protein | 724 | 2e-074 |
| Arabidopsis top hits (Blast detail) | Score | e value |
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| AT4G36810.1 GGPS1 (GERANYLGERANYL PYROPHOSPHATE SYNTHASE 1); farnesyltranstransferase | 848 | 5e-091 |
| AT2G18620.1 geranylgeranyl pyrophosphate synthase, putative / GGPP synthetase, putative / farnesyltranstransferase, putative | 731 | 2e-077 |
| AT3G29430.1 geranylgeranyl pyrophosphate synthase, putative / GGPP synthetase, putative / farnesyltranstransferase, putative | 675 | 5e-071 |
| AT3G14510.1 geranylgeranyl pyrophosphate synthase, putative / GGPP synthetase, putative / farnesyltranstransferase, putative | 668 | 3e-070 |
| AT3G32040.1 geranylgeranyl pyrophosphate synthase, putative / GGPP synthetase, putative / farnesyltranstransferase, putative | 666 | 6e-070 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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