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Information for unigene UN50827
| FASTA Sequence |
| Unigene ID: UN50827 | Length: 701 |
SSR | | CTTCTCAAACTCTAGTTTTCGTGACTATAGCACTTGTCCTAGCTTTTGCAGTTCCTCTCAAAGCCCAAGACAGGCAACAAGATTAC
CTCGATGTGCACAACCGTGCTCGTGCCGCTGTTGGTGTGGGCCCGATACGATGGCATGCGGATGTGGCGGAATACGCCCGACAATA
TGCTCTGCAAAGGCGAGGGGACTGTCGTCTCACTCACTCAGGCGGGCGTTACGGCGAAAACTTGGCAAGAAGCACTGGTGATCTGT
CTGGAGCTGACGCAGTGAGGTTGTGGGTCAACGAGAAGAACGACTACTTCTACAGTTCGAACACTTGTCGTTCCGGAAAAGCATGT
GGTCACTATACTCAAGTTGTGTGGAGAAACTCGGTGTGGGTTGGATGTGCCAAAGTCAGGTGTAACAGTGGTGGAACTTTCATCAT
TTGCAGCTATGCTCCTCCTGGTAATGTTAGGGGCCGTTGGCCTTACTAATTATGAATATATATGTACGCAGATGAATAAAACATGT
CCATAGCGGACGTACGTGTGTGTGTGTTTTTATCTTTCAAATCATGATTACCATCTACCAGTATATGGTGATTCCTTAACGTTCAT
GTGTATGGTTGTATAATATTTTGTGATGGAATAATACATTGATAAATAGTTGTCTGTACGTACAATTACAAATAAATGCATTGCAT
GTGGACATGCAAG
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002862299 hypothetical protein ARALYDRAFT_497527 [Arabidopsis lyrata subsp. lyrata] | 637 | 2e-064 |
| XP_002869195 hypothetical protein ARALYDRAFT_491309 [Arabidopsis lyrata subsp. lyrata] | 615 | 6e-062 |
| AAD40121 contains similarity to SCP-like extracellular proteins; Pfam PF00188, Score=196.7, E=3.7e-55, N=1 [Arabidopsis thaliana] | 612 | 1e-061 |
| NP_195097 putative pathogenesis-related protein [Arabidopsis thaliana] | 610 | 2e-061 |
| XP_002862297 hypothetical protein ARALYDRAFT_920939 [Arabidopsis lyrata subsp. lyrata] | 609 | 3e-061 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| P33154 Pathogenesis-related protein 1 | 503 | 3e-050 |
| Q41359 Pathogenesis-related protein PR-1 type | 481 | 1e-047 |
| P08299 Pathogenesis-related protein 1A | 474 | 7e-047 |
| P09042 Pathogenesis-related protein 1C | 473 | 9e-047 |
| P07053 Pathogenesis-related protein 1B | 462 | 2e-045 |
| TrEMBL top hits (Blast detail) | Score | e value |
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| Q9XH05 T1N24.14 protein | 612 | 1e-061 |
| Q39187 Pathogenesis-related protein 1 | 610 | 2e-061 |
| B9HN43 Predicted protein | 530 | 3e-052 |
| B9P7C7 Predicted protein | 530 | 3e-052 |
| B9HN42 Predicted protein | 527 | 7e-052 |
| Arabidopsis top hits (Blast detail) | Score | e value |
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| AT5G26130.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, extracellular region; EXPRESSED IN: root, leaf; EXPRESSED DURING: LP.04 four leaves visible; CONTAINS InterPro DOMAIN/s: Allergen V5/Tpx-1 related, conserved site (InterPro:IPR018244), Allergen V5/Tpx-1 related (InterPro:IPR001283), SCP-like extracellular (InterPro:IPR014044); BEST Arabidopsis thaliana protein match is: pathogenesis-related protein, putative (TAIR:AT4G33710.1); Has 2282 Blast hits to 2195 proteins in 288 species: Archae - 0; Bacteria - 49; Metazoa - 1341; Fungi - 231; Plants - 611; Viruses - 0; Other Eukaryotes - 50 (source: NCBI BLink). | 618 | 1e-064 |
| AT4G33710.1 pathogenesis-related protein, putative | 616 | 2e-064 |
| AT2G14580.1 ATPRB1 | 529 | 3e-054 |
| AT4G33720.1 pathogenesis-related protein, putative | 528 | 3e-054 |
| AT2G14610.1 PR1 (PATHOGENESIS-RELATED GENE 1) | 504 | 2e-051 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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