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Information for unigene UN50843

FASTA Sequence
Unigene ID: UN50843Length: 959 SSR 
GGATCCTTATATCCAAACACATCTCACCCCCCTTCGAGACTTCTTCCTTCTTCCTTCTTCTTCTTCCTCGCCGATCGCAACTTCCG
TCTTCTCTCAGCAAATCCTTTAACGACAATGGATTACGACTTCAGAAACAAGTCAGGTCCCTCCTACGGCCGTCCTATGTACCCAT
CTCCTTCTCCATCATCTATGTACACCGGTCCTCCCGGATACCCAAAGATCGGTGGCGGCCAACCGTTTTTCCCTCCGCCGCCGGAG
AGAACCCCGTCGTTTCAACACAACCCCTCTTCATCTGGATTAGGAATCAAGGTGACTCTCAAGCCTGACTATCGTATCACTCCTCC
GCCTCCGTTGTTGCCTCGAGTTGGAGATGTTCCTAGGAGCAGCTTTCAGTTCGATTTCGGACTAGAAAGGAAGGTTCTTGCTGAGG
CGGAGAAGGATAACCCTGATTGGAGCAAGTTTGGGTCCGACCATCCTCCTCCTCCTCCTCCACCGGCGAACTTTTCACAACCGCCG
CCGGCTAATTTTGCACAACCACCACCGGCACATTCAATGGGTGTAGATCCTGTAGTGATGAAATATGCTGGGCTAAACCGAGAAGC
TGTCAACATCGCTGTTGCAAACTATGGTGATAATCCCACAAAGGTTCATGAATTTGCAAATGGGTTCAGTGCGATAAGGGAGATGG
GGTTCCCAACGAACGCTGTTGCAGATGCTCTCTTCATGTTCGAGAACGACACTGAGAAGGCATTGTCACATTTGCTCCATGGTTCT
TCTTGAACTTTTTTTAGACTTTCAAATTATCCTCCTTCTATAGTGTGTAAGTAAAACATCGAATAATGTAAAAGATTGACAAAAGT
ATAAACATTGTTTTCTTTCACTGTGTAAATGGATGTGATTTGTTTTGGGTGGAGACAAAACTTTGTCAGTAAAGCTATCTATTTCA
CTGCTTCGACTTG

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
XP_002864236 hypothetical protein ARALYDRAFT_918411 [Arabidopsis lyrata subsp. lyrata]8103e-084
NP_568790 Ubiquitin-associated/translation elongation factor EF1B protein [Arabidopsis thaliana]7556e-078
AAK55708 AT5g53330/K19E1_13 [Arabidopsis thaliana]7521e-077
BAB09795 proline-rich cell wall protein-like [Arabidopsis thaliana]4653e-044
BAJ96632 predicted protein [Hordeum vulgare subsp. vulgare]4572e-043

Swiss-Prot top hits Scoree value
No hits found  

TrEMBL top hits (Blast detail)Scoree value
Q8LG11 Proline-rich cell wall protein-like7554e-078
Q93VW9 AT5g53330/K19E1_137521e-077
Q9FK09 Proline-rich cell wall protein-like4652e-044
Q5WA93 Os06g0160400 protein4321e-040
B8B397 Putative uncharacterized protein4312e-040

Arabidopsis top hits (Blast detail)Scoree value
AT5G53330.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote (InterPro:IPR015940); Has 28 Blast hits to 28 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 11; Fungi - 2; Plants - 15; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).7633e-081
AT1G62440.1 LRX2 (LEUCINE-RICH REPEAT/EXTENSIN 2); protein binding / structural constituent of cell wall1154e-006

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
84  31%
 
125  38%
 
103  23%
 
111  8%

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