 |
Information for unigene UN51050
| FASTA Sequence |
| Unigene ID: UN51050 | Length: 1100 |
SSR | | GGACCAGAGGAGAGAAGTTCGTGGAAACGCCACTAACGAACGAGATCTAGTACTAGCACGGACCGACCCCGTAGTTGCGGGGTGTA
CTGAAGGAGACGAAAATAAGCAAGAGAGGGAGCTTCACTGAACCCTAGAAGAAGGAGAGGATAAGATTCAGCACAGATCGATCGAT
CGAAGAAGAAGAAGAAGATGAACATTTTCAGATTAGCAGGTGATATGACTCACCTGGCCAGTGTCCTCGTCTTGCTCCTCAAGATC
CACACCATCAAATCCTGCGCTGGTGTGTCATTGAAGACTCAAGAGCTCTACGCCATTGTATTCGCGACGCGTTATTTGGATATTTT
CACGAGCTTTGTCTCCCTCTACAACACCTTCATGAAGTTGGTCTTCTTAGGAAGCTCCTTCTCCATTGTTTGGTACATGAGGTATC
ACAAGGCCGTCCAAAGGACTTACGACAGGGAGCAATATACCTTTCGTCATTGGTTCCTTGTCCTTCCCTGCCTTCTCTTGGCTCTT
CTCATTCACGAAAAGTTCACCTTTCTTTAGGTACTGTGGACGTTTTCGTTGTACTTGGAGGCTGTTGCTATATTACCTCAGCTTGT
CTTGCTGCAAAGGACTAGAAATATCGATAACTTGACCGGGCAATACATATTCCTCCTTGGTGGGTACAGGGGATTGTACATCCTAA
ACTGGATCTACCGTTACTTCACTGAGCCTCACTTTGTGCACTGGATAACATGGATCGCGGGGTTTGTTCAGACATTGCTCTATGCC
GACTTCTTCTATTATTATTTCCTAAGCTGGAAGAACAACAAAAAGCTCCAGTTGCCAGCTTAATCTGGATTTTCGATGCTCGGAAA
CCCTACCGGGTGCCTGGATACAATATCTGCTGGAAAGTTTACCAGTTTACTCTGTTGTTAGTTAATGGAGGAGACGAGCATAGATT
TTATGTACCAGAGATCTAACTTGTTGTTACACATTTTTGAACTTTTTCGTGTTTCAGCTTCTGTTAAGTGTTACTAAAATATTTCG
ACAGTACAAATCTTGCAAGTATGACTAGTCTACCGTTTCCTATATACAAAATTATTATGTTCTTACCT
|
|
|
| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002883569 hypothetical protein ARALYDRAFT_480012 [Arabidopsis lyrata subsp. lyrata] | 1108 | 9e-119 |
| AAM64352 ER lumen retaining receptor (HDEL receptor), putative [Arabidopsis thaliana] | 1101 | 6e-118 |
| NP_566758 ER lumen protein retaining receptor [Arabidopsis thaliana] | 1093 | 5e-117 |
| XP_002863780 predicted protein [Arabidopsis lyrata subsp. lyrata] | 1065 | 9e-114 |
| XP_002863175 hypothetical protein ARALYDRAFT_333020 [Arabidopsis lyrata subsp. lyrata] | 1061 | 3e-113 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q9ZTN2 ER lumen protein retaining receptor | 1000 | 1e-107 |
| P35402 ER lumen protein retaining receptor | 816 | 3e-086 |
| O76767 ER lumen protein retaining receptor | 577 | 2e-058 |
| Q5XHA2 ER lumen protein retaining receptor 1 | 570 | 1e-057 |
| Q68ES4 ER lumen protein retaining receptor 1-B | 561 | 1e-056 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q8LD09 ER lumen protein retaining receptor | 1101 | 4e-118 |
| Q8VWI1 ER lumen protein retaining receptor | 1093 | 4e-117 |
| C6TCM4 ER lumen protein retaining receptor | 1023 | 5e-109 |
| C6T4N9 ER lumen protein retaining receptor | 1022 | 6e-109 |
| A9P883 ER lumen protein retaining receptor | 987 | 7e-105 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT3G25040.1 ER lumen protein retaining receptor, putative / HDEL receptor, putative | 1094 | 2e-119 |
| AT1G29330.1 ERD2 (ENDOPLASMIC RETICULUM RETENTION DEFECTIVE 2); KDEL sequence binding / receptor | 817 | 2e-087 |
| AT2G21190.1 ER lumen protein retaining receptor family protein | 257 | 2e-022 |
| AT1G19970.1 ER lumen protein retaining receptor family protein | 256 | 2e-022 |
| AT4G38790.1 ER lumen protein retaining receptor family protein | 241 | 1e-020 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
|
|
|
|
