RadishBase

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Information for unigene UN51192

FASTA Sequence

Unigene ID: UN51192	Length: 1509		SNP
TAAAACTTATGTACATTAGCATTGATATATAAACAGTAAAAGACTTTAAGGAGAGATCTTTGGAAGAAGGAAAAGAAATACATAAA AGCAAAGAACCGAGAAACCAGCCTCCATCTACAACTCCACACCATCATTTCTACTTTATAAAAGAGCCCTTCCCATTTTCTACCAT ATAAAATTACCTGCAACCTATTTTTGTTTACTTTATAATATATATTGCTTATTAAATATTATTATCATTAGATAATAGGATGGTGG GAGATGCTAATAATCTAACTGGCCAACAAAATATTTCAAAAATTGCATTTTATCATATCTTAGAAGAAAAAAAAAACATAACCCCA TATTGCTCTCCACGCTCCACCATCCAACTCTCCTCTTGGTCTGTAATCCTACCACTCTTCCCCTTGGCTAGTAGCAAAAGGGTGTT TTGATTTTTCTGTTTAAGAGTTTCCGGCGCTGGACAATGAAGGATTTGATGCAGACTTGGCGTCTTTTGCATCTGATCTTTCCGCA GCAACTGCGTCTTCCTCGTTCCTACAGCTAAGAGTTCTCGGGTTCATCTTCCTGACCTCCTCTTTCGTGTATATGAAGATTTTACG AACCATGCAACAAAACTCTTGCCAAGGATCGTCTCCAACAAGCATCATATCATTCTCATCATCTGTGTAAACTATCAGCCAATCCT TCTTAGGTGCCATTAACTCTCCATTAAACTCAAACAGCCTATCCAATTCAGTAACCAACTCCTCGTAGTTCTGGAACTTTGAGAGA TCTACTGACCGGCCAAGTGCAATGCCCTGCTTGTGAACCTTCGTGCAGCTCCTACTTGAGTTTGTTTTGGTCTGAACGTCCTTCGG ATGGGGTTTACTAACCGGGAACGGTCGTCCTTGCTCACGATGATCATTTGTCGATTTTGACCCTTTCGACTGGTCAGAAAGATCCT GAACCTTGGGTGATGCTATCTGCGTAAGCCCCGTAGTGTCATTCAAATTGTTTCTCTGAGCCGTAGCTGTATCTGTCCCGTTCACG TTATTCACCAGAGGAATGCCAAAAAGCCTGCAGTTCCCATCTCTTGGCTTTGCTGCCTCCTCTTGTACGACCGCAGGACGTTTTGT TACATGCTCTCTAGCCTGAGCATGGACCGCTTCTTCGAAATAATTTAAAGCTCGGGGACGTATTGGCCAGTTGCCAGCAGCATTCT CAGTCGTCGTCACTGCACGAGGCAAAGCATAGGGATTACTTATCCCTTGGAAAGAGGTATCAGATGCGGCAGGGACTTTGGGGGAT TCATGTAACTTCAGGGAAAGGCCAGAGTGCATCATCTGCCACTGGTTAGCAAGATATTCGAACTTGCCATCCTGGTCGCTGAGGAT TTTCCTTGCGGCCACAGAAGGTGATGATGATAAACGGTCGTACATAGGTATTTGATGACCGTGAGGTGGTGGTGGTTCTATGTTTG CCCCAAAGCCAGAAAGCAAATCCGTGTAAGCAGGTTGTTCATGCCTG

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
CAG30068 putative auxin response factor [Brassica napus]	1649	3e-181
BAJ34183 unnamed protein product [Thellungiella halophila]	1464	8e-160
BAD93968 ARF1-binding protein [Arabidopsis thaliana]	1462	1e-159
NP_851244 auxin response factor 2 [Arabidopsis thaliana]	1460	2e-159
AAG53999 ARF2 [Arabidopsis thaliana]	1460	2e-159

Swiss-Prot top hits (Blast detail)	Score	e value
Q94JM3 Auxin response factor 2	1466	2e-161
A2ZET6 Auxin response factor 23	433	1e-041
Q2R3F5 Auxin response factor 23	433	1e-041
Q2QQX6 Auxin response factor 24	429	3e-041
Q5JK20 Auxin response factor 4	426	8e-041

TrEMBL top hits (Blast detail)	Score	e value
Q6KBS4 Putative auxin response factor	1649	2e-181
C0SVV4 Putative uncharacterized protein At5g62010 (Fragment)	1460	2e-159
B9IFK3 Predicted protein	682	3e-069
Q84QI6 Auxin response factor-like protein	680	4e-069
B9RA75 Auxin response factor, putative	620	4e-062

Arabidopsis top hits (Blast detail)	Score	e value
AT5G62000.1 ARF2 (AUXIN RESPONSE FACTOR 2); protein binding / transcription factor	1467	1e-162
AT5G62000.2 ARF2 (AUXIN RESPONSE FACTOR 2); protein binding / transcription factor	1467	1e-162
AT5G62000.3 ARF2 (AUXIN RESPONSE FACTOR 2); protein binding / transcription factor	1467	1e-162
AT1G59750.1 ARF1 (AUXIN RESPONSE FACTOR 1); DNA binding / transcription factor	381	1e-036
AT1G59750.2 ARF1 (AUXIN RESPONSE FACTOR 1); DNA binding / transcription factor	381	1e-036

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


8	2			29%


6	1			14%


9	2			29%


19	2			29%

Unigene Members	Member information