 |
Information for unigene UN51292
| FASTA Sequence |
| Unigene ID: UN51292 | Length: 1375 |
SSR | | AAAAAAATAATCCTATAAAATAAAACTTTTGAATCACGGTCACATAAACAGAGGAAAAAAAAGACAAAGCTACAAAGAAAAAACAC
TAATACATCAGGTTTTTCTCCTACTATACATAAACACCAAAAGTCATCATCATCAAACACAAGCAACCTCTTGAGATGAATAAAAA
AGTTGGGAGAAAAACAACGTATTTGTAACTTAAGAAATATAAATAGCGATCTTTTGAATTACTCAGGGCTTGGGAGGGTTGTTGGA
ATTATCAAATTTTCTCTTGAGGACAATGACCCAAGTTACAGCTTCCAAGAGCAAAGTAATGCCTCCCAAAGTCGCAATAACAGCGA
TATAAGCGGTCTTGTAAGTATGCTCTGGGTTCAAGATGCTAAAACCTTTGAAAACATTGATGATTCCAAGGATAAGGATAGAGTAT
CCAACTCCATGGTGGTAAATATTCCAAAAAAATCTCAACTTGTGGTCCTTCCTTGGCCGCAACAGCATCGCAAACATCTGAAGCGT
GGCCATAGCGAAAAAAGCAATGCCGATGTTGCGATGACTGTTGAATGTAATTCCCTTGGGCTCGGAGCCGAACTTGAGTCCGGTTG
CCCATCCAGCAACACCGATGACATAAGCAAAAAACTGACATGACACGTGGAGGTAAAACCAAGCAGGATCCGCGGATTCAAATATT
CTCATGTATCTTGCTATCATTGCTCCAATCGGAAACAAAATTCCCCAACTCACCGCATTCAATATCCCATGGATGTTTCTCTTACG
AATCCTTGAGCTTCCAGCACCGCCGCCGCCGCCGGAGGCAGATACCCCTGTAGTGGCGCCGCTCAAATCGAGCGATCCAACGGCGT
TAATATTCGGAGCGTTGAAATCGTGTGGCTGTATCCTCCCGTTAGGTGACACTCCAGGTCCAACCTGCCAAACCTGGTTAACCTTC
CCATTCGCAGCTAAATCCGCCGGAACCTTAACCTTCGCGAAGATCCTTAGAGTTCCGGCCGCCTCCTCCTCCGCCTTAACGTCCCA
TACATCGAAGGATAGCTTCCCCGGGACAAGCGAGCTGTATGAGATGATGTTAAGCGTGGTCACGGTGGCAACACCGGTTTTTGAGT
CTTTTGAGGCGACGAGTGCTTGAGATCCAGCCATGCCGTTGGCTTTAGGGTTAATCGCCCACGCGATCCAACCGCCGGGTTTGGAC
GGCGGAGCAGAGAAAACAACGGCGAGAGTTGTGTTGGCAGCGTCATAGGAGTAATGGAGGAAGGCTTTGAGGTTAGGGAGGGCGAG
ACAGTGAGGGTATGATTTGTCGCCGGAAAATGTCTGTGACGAATGACTGCGAGACAGCCGGTGAGATTAGCAGAGCCGAGAATCC
|
|
|
| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002863188 predicted protein [Arabidopsis lyrata subsp. lyrata] | 1621 | 4e-178 |
| NP_193034 putative auxin-responsive protein [Arabidopsis thaliana] | 1605 | 3e-176 |
| AAM65781 unknown [Arabidopsis thaliana] | 1602 | 7e-176 |
| XP_002883602 predicted protein [Arabidopsis lyrata subsp. lyrata] | 1439 | 5e-157 |
| NP_566763 putative auxin-responsive protein [Arabidopsis thaliana] | 1432 | 4e-156 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q94BT2 Auxin-induced in root cultures protein 12 | 345 | 2e-031 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q9SV71 Putative uncharacterized protein AT4g12980 | 1605 | 2e-176 |
| Q8L9T0 Putative uncharacterized protein | 1602 | 5e-176 |
| Q9LSE7 AT3g25290/MJL12_25 | 1432 | 2e-156 |
| B9T491 Dopamine beta-monooxygenase, putative | 1188 | 5e-128 |
| A9PDC9 Putative uncharacterized protein | 1163 | 4e-125 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT4G12980.1 auxin-responsive protein, putative | 1605 | 1e-178 |
| AT3G25290.1 auxin-responsive family protein | 1432 | 1e-158 |
| AT3G25290.2 auxin-responsive family protein | 1432 | 1e-158 |
| AT4G17280.1 INVOLVED IN: multicellular organismal development; LOCATED IN: membrane; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised conserved protein UCP037471 (InterPro:IPR017214), Protein of unknown function DUF568, DOMON-like (InterPro:IPR007613), DOMON related (InterPro:IPR005018), Cytochrome b561/ferric reductase transmembrane (InterPro:IPR006593); BEST Arabidopsis thaliana protein match is: auxin-responsive protein, putative (TAIR:AT5G47530.1); Has 203 Blast hits to 203 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 203; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | 885 | 3e-095 |
| AT5G47530.1 auxin-responsive protein, putative | 873 | 9e-094 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
|
|
|
|
