RadishBase

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Information for unigene UN51410

FASTA Sequence

Unigene ID: UN51410	Length: 1218	SSR
GGAGTTCTTATTTGTAAATACTAATATAAGTTCAACGTCTTACATTAAAAAGAAGGAGAAAAACGCACTCAATGAAAGCTAACCCG AGAGACGATAGTAATTACAGATAACTAAACTACGTACGAGAGATACTATTATTATATGATTACTGCATCATTAGTCAGTACCGAAA CATCAGAGAGACAAAGATAGCGAAAGAGAGCTTTAATCCGGTGAGACGCCTGCGTAGGAGTTTAGACATAACTTGAGAGAAGCACA AGGCCCTCTACCATAATAATCACGCTCGTCCGACTGTCCGTACTTCAAAAAGGCATCACCACTGCCGTTGATGTGATCCTCACCGT GCATAGGGAAGAGAGAAAGTGTACGTCTATGTTCCAGATAAGCATCGCCACCATATTCTCCTTCTTCTTCGTGATCTTTTAGTCCA GACAGAGGCTTTGGTCTATCGAAGAAGTTGTAAGCTGGAGCTGAGTAATGATGATTATGATCCATGTTTGTCCATCCTCCGCCTAA GTTGTTGTAGCTCACTGAATAATCTTGTTCCATAGATCCATAGAGATGGCTACTCATGTAGCCATTGGGAGAAGCATTAAGAGCAC CACATTCAGTGCCGTTATGAAAGTTGGGATATGATATGTTCTGATGAAGGAGATGATTTTCTTGGTCAAGCTTAATATTGACCGAA GCAGGCCTATGCATGGTAACACCATGATGATGATGATGCAGAAGAGGATGATGTTGATGATGATAATGGTCGTTGGCCATCATAAC CGAGTTGGGGGATGAAGATGTTGGTGTGGTCATGGTTGTGCCGTTGAATCTCTTCTTCTGTCGCTCACGAGCCTTGTGGTTCTGGA ACCAGTAAAAGACGTTCTTACCCTCGATCTTTCCGTACTGTCTCAGCCGTGCAGAGATCTTCTGGATCTGGTCGGCTGTTGGTGAC CGAACTCCGTTGTTGTAGTAGAGATCTTTGAGGATTCTGATCTGCTCCGTCGTTGGTGTCCATCTTGTGCTCGTTTGGCGACACGG GTAACCACCAGAGCCGGACTTGTTGTTGTTGCCGCTCTCTTGGTCGGTTTGCTGATGGTGATGGTTATGATATTGCGGTTGCTCCA TTTCAAGATCAAGATGAAAAATAGATCGGAAGAAGAAGACAGTGATTTAAAGTGAGAGAATGAACTTTTACTTTACCAATAAAAGA ACTTAAGCAAAAGC

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
XP_002886138 hypothetical protein ARALYDRAFT_900150 [Arabidopsis lyrata subsp. lyrata]	1164	4e-125
ABK28496 unknown [Arabidopsis thaliana]	1130	3e-121
NP_565429 protein WUSCHEL [Arabidopsis thaliana]	1126	9e-121
CAA09986 WUSCHEL protein [Arabidopsis thaliana]	1124	2e-120
ACK77479 WUSCHEL [Medicago truncatula]	459	2e-043

Swiss-Prot top hits (Blast detail)	Score	e value
Q9SB92 Protein WUSCHEL	1126	4e-122
Q8LL11 Protein WUSCHEL	401	5e-038
Q6YBV1 Protein WUSCHEL	399	8e-038
Q84VT7 Protein WUSCHEL	365	7e-034
Q7XM13 WUSCHEL-related homeobox 1A	343	2e-031

TrEMBL top hits (Blast detail)	Score	e value
A0MEM4 Putative uncharacterized protein (Fragment)	1130	2e-121
Q1PF51 At2g17950	1126	6e-121
B7UCW4 WUSCHEL	459	1e-043
B2ZJV4 Wuschel-like protein	406	2e-037
A5B5L3 Putative uncharacterized protein	405	2e-037

Arabidopsis top hits (Blast detail)	Score	e value
AT2G17950.1 WUS (WUSCHEL); DNA binding / protein binding / transcription factor/ transcription regulator	1130	1e-123
AT3G18010.1 WOX1 (WUSCHEL related homeobox 1); transcription factor	256	3e-022
AT2G01500.1 PFS2 (PRETTY FEW SEEDS 2); transcription factor	248	2e-021
AT3G11260.1 WOX5 (WUSCHEL RELATED HOMEOBOX 5); transcription factor	248	2e-021
AT5G05770.1 WOX7 (WUSCHEL-RELATED HOMEOBOX 7); DNA binding / transcription factor	242	1e-020

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


12	4			67%


10	2			33%

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