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Information for unigene UN51415
| FASTA Sequence |
| Unigene ID: UN51415 | Length: 1297 |
| SNP | ATAGAATTGAAATGAAGTTTTATTAGAGGACTAAAACATTATTTGTGATCACAAATCTCTCACACATTCACTCTTATCTTTGAAAA
TGTTCAGCGTCTCTCACCTGATATAACCAACAAACAAAGTCTGTAACAAAACAAGACCAAGAAAAACAAGACAAGAACCACAGTTA
GTTGAAGACATGTCTTAACCACAATCAAGAACCTCATTAGTTCAATTAAGTGAACTAAGAAACTCAACCCAAATATGTTCTGCTCT
CTTGGTCGTCTCAAGAGCGAACTCCTCAGCAGCTTGCTCGTCCTTCGCCTTACGCACAGCCACGTGATACTCTTCATAAGCCTGAG
AAGCCTCCTTTAGAAGCCGTGCTAGGTTAGTCTCCGTAGACTTAAACTTAAGATCAATGTTCAGTTTCTCTGCTTCAAGCTTAACC
AACAGTTTCTTGATCGCAAAGATTTTGATAGACAACGCGTCTCCTCCTTGAGCAAGAGTCTTGGCGAATGCGAACTCGGCGTCCAC
GGCTCTCTGCTTCTCCATGGCGGTTTCTTTGAGAAGCTTGGCGCGTGTCTGAGCAATGTGAACTCTCTGTGAAGCCTCGAGTCCTT
CTTTAATGACGGTTTTGTATTTGGCTAACAAAGAGATGTAACCTATTGAAGCTGAGCTGAGTACCTCGTAACGTGTACCGGCTTCG
ATAATCTCGTCGAAGTTGGGATGGTTTACAAGGTCACGTGCGGTTAGACCGCGTAGCTTCTTTAGGGTTAGCTTTAAGCTCTCTAT
GTTCTCGGATGTAGACGAGACAATGTCTGTGCGTCCCTTTGAGGTTGTTTCTTGTCTATGGGTGTGAACGAGATTGTTCAGTGAAG
TGGTGAGGCTAGAGGTCTCTGAGCCCTGGAAGTTTGATTCTTCAGCAAGTATCTCTCCTATGTTAATTGAACAATCAGTGTCTACC
TTAATACCATCTTTGCCTTGGTTAAAACAACCACACACACCATCTGTAGACTTTAGAAGACTGCTAAAACCAGAGTTGGATCCACC
AGAAGTTTTCTGCACTTTACTTATGGTTTGTGTATTCTTTGAAGCTGCTGCTTCATATTCGCGTTCAATTTCTTCCAACATGCTGC
TTCTATGAGTTTCAGCTTCTTCTTTATAAGTCTTTTCTACATGGCCCTTAGTCGCAGCTTCAAACTCACGTTCAATAGCATCAAGC
ATACTTTTCCTAGTTTCCAGGTGTTCATCATGATCTTTGCCTTCGGTTGAATCACTAGACTTTTGCTCTCCAAGACCTTTTGTAGC
AGCTTCC
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002885118 predicted protein [Arabidopsis lyrata subsp. lyrata] | 782 | 8e-081 |
| NP_188216 DNA topoisomerase-like protein [Arabidopsis thaliana] | 772 | 1e-079 |
| CAC81061 hypothetical protein [Arabidopsis thaliana] | 772 | 1e-079 |
| NP_001030708 DNA topoisomerase-like protein [Arabidopsis thaliana] | 772 | 1e-079 |
| NP_188217 mismatched DNA binding / ATP binding protein [Arabidopsis thaliana] | 618 | 8e-062 |
| Swiss-Prot top hits | Score | e value |
|---|
| No hits found | | |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q94AE1 At1g52410/F19K6_14 | 834 | 5e-087 |
| Q9C831 Myosin-like protein; 12311-7712 | 834 | 5e-087 |
| Q712H0 Putative uncharacterized protein (Fragment) | 772 | 7e-080 |
| Q9LSB4 Genomic DNA, chromosome 3, P1 clone: MVC8 | 772 | 7e-080 |
| Q9LSB3 Genomic DNA, chromosome 3, P1 clone: MVC8 | 566 | 6e-056 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT1G52410.1 TSA1 (TSK-ASSOCIATING PROTEIN 1); calcium ion binding / protein binding | 834 | 3e-089 |
| AT1G52410.2 TSA1 (TSK-ASSOCIATING PROTEIN 1); calcium ion binding / protein binding | 834 | 3e-089 |
| AT3G15950.1 NAI2 | 773 | 3e-082 |
| AT3G15950.2 NAI2 | 773 | 3e-082 |
| AT3G15960.1 ATP binding / mismatched DNA binding | 618 | 3e-064 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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