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Information for unigene UN51428
| FASTA Sequence |
| Unigene ID: UN51428 | Length: 973 |
SSR | | AATCTGCTTGAACACATTGCATAAGCCCATATTTGCAAACCATCACATATAGCTATTAAAATTCCAAACAAACCAAAAATTACAAG
ATAAAGGGGTTTCGAGAAGAAACCAAAGACAAATATAACAAAACATAAACTTTGGAAGTAAAAAAACAAGCCCCCTTCATAGACGA
TTCAATTATACAAAAGACTTATAACCCTAAGAGAAGCTAAACCATCATCACTTCTTCCTCGTCGAAGCCCTTTTCGCCGGAGACTT
CACCTTCGCACTCTTAGCCGGAACTTTCTTACTCGCCGCAGCTTTCTTAGCCGCAGGAGCAGCCGCTTTCTTAGCAGGAGCAGCCT
TCTTCCCTGGAGACGTCCTACTCGAAGTCCTCGAAGCTTTAGCAGGTCTCTCCTTCGCCTTAGGCTTCGCAGCAACCGCCTTGGTC
TTCGAGACAGCAGCTACACTCTTCGTCTTAGGCTTCGCAGTAACTTTCGGCTTCGCAGCAGCTTTAGTTGACGTTGTCTTTGACTT
AGGCTTAGCAGCAGAAGCAGCAGGTTTCTTGGTTCCTTTAGCAGCTGGTTTGGCCTTAGCAGGAGCAGCAGCTGCTTTACCCTTCG
GTTTAGTAACAGCAGCAGCCGGTTTCTTCTTAACTGGTTTCGTCGCCGCAGCCGGTTTAGCAGACGGAATCTTGAAAGAGGCTAGA
TCCGGTCCTCTCCTTCAACGTCACGATCGCATCCTTTATCATCTCTTCGTAAGGAGGATGAGACGAAGTGGTTCTCTTCCTCGGTG
CAGCAGCAGCAGCAGGCTTCTTCTTAGCTTCCTTCGTCTTCTTAGCTTTGGCTTTAGCAGGTTTCTTCTCCGTCGTCGTCACCGTG
GCTTCGGCTTCGGCTTCGGCGTCTCCTGACTCCACGACCTTGGGTTCTTCCTCCGTCGACATCTTTTTAGGGATTTGAATTTTTTT
TTTTTGTTTTTGTTGGTTTTGAGATCC
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| NP_180620 histone H1.2 [Arabidopsis thaliana] | 430 | 3e-040 |
| BAH57180 AT2G30620 [Arabidopsis thaliana] | 430 | 3e-040 |
| XP_002879272 hypothetical protein ARALYDRAFT_481979 [Arabidopsis lyrata subsp. lyrata] | 414 | 2e-038 |
| XP_002282346 PREDICTED: hypothetical protein [Vitis vinifera] | 307 | 6e-026 |
| AAK29451 histone H1 [Pisum sativum] | 283 | 4e-023 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| P26569 Histone H1.2 | 449 | 9e-044 |
| P37218 Histone H1 | 273 | 2e-023 |
| P26568 Histone H1.1 | 268 | 9e-023 |
| P15276 Transcriptional regulatory protein AlgP | 241 | 1e-019 |
| P27806 Histone H1 | 222 | 2e-017 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| C0Z3A1 AT2G30620 protein | 430 | 2e-040 |
| C5WX48 Putative uncharacterized protein Sb01g005010 | 333 | 4e-029 |
| Q9AT18 Histone H1 (Fragment) | 286 | 1e-023 |
| Q9AT23 Histone H1 (Fragment) | 283 | 2e-023 |
| Q9AT19 Histone H1 (Fragment) | 280 | 5e-023 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT2G30620.1 histone H1.2 | 449 | 8e-045 |
| AT1G06760.1 histone H1, putative | 276 | 9e-025 |
| AT4G31880.1 LOCATED IN: cytosol, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: binding (TAIR:AT1G15940.1); Has 114836 Blast hits to 56273 proteins in 1914 species: Archae - 187; Bacteria - 15478; Metazoa - 53116; Fungi - 16017; Plants - 4342; Viruses - 719; Other Eukaryotes - 24977 (source: NCBI BLink). | 121 | 9e-007 |
| AT2G18050.1 HIS1-3 (HISTONE H1-3); DNA binding / nucleosomal DNA binding | 116 | 3e-006 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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