Library    |     Search    |     Batch query    |     SNP    |     SSR  

Information for unigene UN51439

FASTA Sequence
Unigene ID: UN51439Length: 611  SNP
GGACGTCCTGTCGCTTTGCCTAGCTTTTCGTTCAATTTCTCTTTTCCTTCATTTTCTTCTCTTTCTTGTTCTTCCCTCTCTAAATC
ATCAGCTAAAACTGAGGGAGGGAAGAACGTACGAATCTTTTTAAAACTGAATATATAATTGGTTATATATCAAACTAAGCAGTTAA
AGAGAAGAGTGAAAGGGAGAAAATCTCAGCACTGAAAATGTCGGCGTCTAAACTTTTCTTCGGAGCTCTTACAATCGTATGGATAG
TTTTCTCCATTTTCTTCCCAATGGCACAGGCTCAGTCCGCAGCTCCGGCTCCCGCTCCGTCAAGCGATGGAACAACAATAGATCAA
GGCATAGCATATGTCCTTATGTTGGTGGCTTTGGTCCTCACTTATTACATCCATTAATACTTTTGTCATTTTAATTCTGGTCTCTA
TTTAGTTTAATTATATTTTCTCATTTTGATTATAATTAAATAGAGACCAGAAAAGTTTATGTCGTAGAGAAATTAACGAGATTTTC
TAATATTTGGAGTGATATAATTTTGAAGTTCATTTGTATAACGTCGATATGCGTCAACTGTTGGAAATATATTTCATCACTTTACA
TCTTTCTTC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
XP_002872092 hypothetical protein ARALYDRAFT_910430 [Arabidopsis lyrata subsp. lyrata]2581e-020
NP_974828 arabinogalactan protein 41 [Arabidopsis thaliana]2526e-020
XP_002320846 hypothetical protein POPTRDRAFT_572354 [Populus trichocarpa]1934e-013
XP_002509921 conserved hypothetical protein [Ricinus communis]1917e-013
XP_002331821 predicted protein [Populus trichocarpa]1891e-012

Swiss-Prot top hits (Blast detail)Scoree value
Q9FK16 Arabinogalactan peptide 221833e-013
Q9M373 Arabinogalactan peptide 201806e-013
O82337 Arabinogalactan peptide 161752e-012

TrEMBL top hits (Blast detail)Scoree value
Q8L9T8 At5g241052524e-020
A9PBL3 Putative uncharacterized protein1933e-013
B9RCN6 Putative uncharacterized protein1915e-013
B9N989 Predicted protein1898e-013
B9T338 Putative uncharacterized protein1881e-012

Arabidopsis top hits (Blast detail)Scoree value
AT5G24105.1 AGP41 (ARABINOGALACTAN-PROTEIN 41)2532e-022
AT5G53250.1 AGP22 (ARABINOGALACTAN PROTEIN 22)1842e-014
AT3G61640.1 AGP201806e-014
AT2G46330.1 AGP16 (ARABINOGALACTAN PROTEIN 16)1752e-013

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
115  29%
 
108  47%
 
62  12%
 
82  12%

Unigene MembersMember information