RadishBase

| | | |

Information for unigene UN51458

FASTA Sequence

Unigene ID: UN51458	Length: 1050	SSR
CCACCATGTATTAATGTATATAACAAAAAAAAACATTCAAACATAACAAGGTTCAGATTCAGAGATCACAATAAAATGATTCTGTA ATCCAATAATATTTTTTTTCGAATATATATATATCAATAGACAATACTGAATCTGAACTGTTTTTAAGGTTTCTTCTTCTTTTTTT TTACTTACACAACGGCTCAAGGAAACAGCCAAAGAGCTGAAACTGTTTTTAAAGTTTCTTCCACAACGGCTCAAGGAAACAACCAA GGAGCTATCAACTGGTGAATGAAGTTTTAGCAGAGAGATGGATTAAAGCGCGACGATGGTACTGGCTTCTTAGCTTCTTATACTTC TGCACAAACGCTGCTGTATCAATCTCCTTGTCCATATACTTCTGTTGCAGCTCCTCTGATTCTTCATCTCCCTTCTTCATAGCATC TTGAAGTCTATGAAGAAGAGAAGCAGGAGAGTAGAATTTGAGGATCTCGTCTCTTTGATTCTCGAGCTCATTGAGCTTCTCTTGAG CAGTTGCAAGCTCACTCGTACGGATTATTCTGCATTGGTTTCTGAGCTCCACCATCTGTGGTTCTTTCTCCATGTTTTCTCTAGCA AGATGTAATGTTTCTTTGCGAAGCTCTTCTCTGATGTTGTTTTGAATAGTGACCTGCTCAAGGGAGTTCAAGAAGTGTTGGTAAGC ATCCTTGTCAGTGAGAAGCTTCCTGAGCTCATCCACACTTTTGTCTTTCAAAAGTGAGATAATGGAGGCAGCTTCAGTAGGTGAAA CATGGGATGGGATGTGCCCACCTGATGATGACTGAGGCCGAGATAAGCTAGGAGAGGTGACCAGAGACGGAGAATACCATGGTTGT GGAGATGGTTCTGGAGAAGAAGGACGAGACTCCCCAAGTTGCTCCTTTGATCCCCAGAAATTGAACATGTTTCCTCCGATCACCCG ATTTCGAAGATTACAGAAATATCGCAAAGCAGATGATCGCTGATACAAGAAACAAAATCGATTTAACTTGAGAGCAGATGAAGGAA GGATCGAGGCAGAATCCC

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
NP_850268 vacuolar protein-sorting-associated protein 37-2 [Arabidopsis thaliana]	909	1e-095
XP_002881460 predicted protein [Arabidopsis lyrata subsp. lyrata]	856	1e-089
NP_190880 vacuolar protein-sorting-associated protein 37-1 [Arabidopsis thaliana]	799	6e-083
XP_002877902 hypothetical protein ARALYDRAFT_906697 [Arabidopsis lyrata subsp. lyrata]	789	9e-082
XP_002519434 conserved hypothetical protein [Ricinus communis]	737	9e-076

Swiss-Prot top hits (Blast detail)	Score	e value
Q3EBL9 Vacuolar protein-sorting-associated protein 37 homolog 2	920	2e-098
Q9SCP9 Vacuolar protein-sorting-associated protein 37 homolog 1	810	1e-085
A5D8V6 Vacuolar protein sorting-associated protein 37C	125	4e-006
Q8R105 Vacuolar protein sorting-associated protein 37C	123	6e-006

TrEMBL top hits (Blast detail)	Score	e value
B9S0B5 Putative uncharacterized protein	737	6e-076
C6T5T2 Putative uncharacterized protein	673	2e-068
C6SWV9 Putative uncharacterized protein	645	3e-065
B9MTK7 Predicted protein	620	2e-062
B9IFT3 Predicted protein	612	2e-061

Arabidopsis top hits (Blast detail)	Score	e value
AT2G36680.1 LOCATED IN: ESCRT I complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Modifier of rudimentary, Modr (InterPro:IPR009851); BEST Arabidopsis thaliana protein match is: VPS37-1 (TAIR:AT3G53120.1); Has 348 Blast hits to 348 proteins in 85 species: Archae - 1; Bacteria - 4; Metazoa - 236; Fungi - 19; Plants - 37; Viruses - 0; Other Eukaryotes - 51 (source: NCBI BLink).	920	2e-099
AT3G53120.1 VPS37-1	810	1e-086
AT2G36680.2 LOCATED IN: ESCRT I complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Modifier of rudimentary, Modr (InterPro:IPR009851); BEST Arabidopsis thaliana protein match is: VPS37-1 (TAIR:AT3G53120.1); Has 39 Blast hits to 39 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 35; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).	508	1e-051
AT2G36680.3 LOCATED IN: ESCRT I complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Modifier of rudimentary, Modr (InterPro:IPR009851); BEST Arabidopsis thaliana protein match is: VPS37-1 (TAIR:AT3G53120.1); Has 46 Blast hits to 46 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 7; Fungi - 0; Plants - 35; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).	508	1e-051
AT2G36680.4 LOCATED IN: ESCRT I complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Modifier of rudimentary, Modr (InterPro:IPR009851); BEST Arabidopsis thaliana protein match is: VPS37-1 (TAIR:AT3G53120.1); Has 46 Blast hits to 46 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 7; Fungi - 0; Plants - 35; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).	508	1e-051

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


6	4			100%

Unigene Members	Member information