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Information for unigene UN51472
| FASTA Sequence |
| Unigene ID: UN51472 | Length: 1385 |
SSR | | GGATCATCAAACAAAAAAGAAAACACATTTGTCCGAGTTTCGTTCGAGAGCTGCGCCTTCAAGAAATCGAAAGAGAGCTTTCTTCC
TTTTTCCTTCGTTCTTTCTACGATTCCAAAGTATCTCTATCAGGTCAACGTTCTTCTTTGTGGCATTGAGGGGTAGAGAGAGATGT
CTGATCATCTGAGTTCATGTACGGACCGTCTCGTAACATCTGATCACCTGAATTCAGACAGAGGAGGATCCATTGAATCTTCTGGA
GAAAGTTCCAGAGCTCAAGGCACCACGATCATTTCTTCTACGACTACTACTATTACTAAATCTATGTATGATAAAACTGTGCAAGT
AGAAGAACGTGATGTCGCTGACGAAGAGGAACCACTTATCCAATCAGCTGAATGCCGTATATGCCAAGATGAGGATTCTGTTAAGA
ACCTCGAGTCTCCCTGTTCTTGCAGCGGCAGCTTGAAGTATGCTCATCGGAAGTGTGTTCAGCGTTGGTGTAATGAGAAAGGCGAC
ACTATCTGTGAAATATGCCACAAGTCTTATCAACCTGGCTACACCGCTCCACCACCTCCTCCCGCTGAAGATACTGTTATCGATAT
CGGTGAAGATTGGGCTAACGGTGTTCCCTTAGACTTCAACGACCCTCGCATTTTTGCAATGGCGGCTGCAGAACGCCGTTTCTTTG
ATCCGGACTACGACGAGTATGCTGATTCTAACTCTAGCGGTGCTGCTTTCCTTCGCTCCGCTGCTCTTATCTTAATGGCGCTTTTA
TTGCTGCGACACGCCATGAACCTTTCAAACAACAACAACTCAGACGACGAAGAAGATGATCCATCAGCTTTCTTCTTTCTTTTCAT
GCTCCGTGCTGCCGCTTTTCTCCTCCCTTGTTACATAATGGCTTGGGCTATCAGTATCTTACAACGCCGAAGACAAAGACAGGAAG
CGGCAGCTCTGGCCGCTGCAGAAGTTGCGTTTATGCTACACAACGGGGCTGGCGGTGGAGGACAACGCAGAGGAGGATTGCACTTT
GCTGTAGCACCCGAGCTGATACCGAATCCACAACACCAGCCCGAAGCCTCACCACAATGATTATATATATCCCTGAGTACCGGTTA
AAGAATCCAAAGTATCATCATTATCCACGACTTTGGTCTCTTCTCTCTTCTCTCTCTCTCTCTCTCTCTTTCACTGTTTGTAGTAG
CTGTTTGTTGTTTATGGGTTTATTCCTATGAGCAAAAACACAGAAACTGAGTAAAACAAAATACGGGAAGTCTCTCTGTCTTATGT
TCTTACAGACGAGAAAATAAAGCTTCTTGATATGCTTATGTGTATATATACTTTATACTTGAGAAATTACCAACGATCTTAAGAAG
ATATTCAAC
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| NP_568953 RING/FYVE/PHD zinc finger-containing protein [Arabidopsis thaliana] | 1320 | 3e-143 |
| XP_002864796 hypothetical protein ARALYDRAFT_496422 [Arabidopsis lyrata subsp. lyrata] | 1307 | 1e-141 |
| XP_002875846 zinc finger family protein [Arabidopsis lyrata subsp. lyrata] | 1009 | 4e-107 |
| NP_190339 RING/FYVE/PHD zinc finger-containing protein [Arabidopsis thaliana] | 1004 | 2e-106 |
| ADA67984 RING-type E3 ubiquitin ligase [Brassica napus] | 949 | 4e-100 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q32L65 E3 ubiquitin-protein ligase MARCH2 | 138 | 2e-007 |
| A0JN69 E3 ubiquitin-protein ligase MARCH3 | 138 | 2e-007 |
| Q86UD3 E3 ubiquitin-protein ligase MARCH3 | 138 | 2e-007 |
| Q8BRX9 E3 ubiquitin-protein ligase MARCH3 | 138 | 2e-007 |
| Q5XIE5 E3 ubiquitin-protein ligase MARCH3 | 138 | 2e-007 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q9FJJ6 AT5g62460/K19B1_7 | 1320 | 2e-143 |
| Q9SN83 Putative uncharacterized protein At3g47550 | 1004 | 1e-106 |
| D2KC47 RING-type E3 ubiquitin ligase | 949 | 2e-100 |
| A9CEI2 Uncharacterized protein At3g47550.2 | 885 | 6e-093 |
| B9RLY9 Membrane associated ring finger 1,8, putative | 838 | 2e-087 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT5G62460.1 zinc finger (C3HC4-type RING finger) family protein | 1321 | 1e-145 |
| AT3G47550.3 zinc finger (C3HC4-type RING finger) family protein | 1004 | 6e-109 |
| AT3G47550.6 zinc finger (C3HC4-type RING finger) family protein | 1004 | 6e-109 |
| AT3G47550.2 zinc finger (C3HC4-type RING finger) family protein | 890 | 9e-096 |
| AT2G02960.2 zinc finger (C3HC4-type RING finger) family protein | 757 | 2e-080 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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