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Information for unigene UN51532
| FASTA Sequence |
| Unigene ID: UN51532 | Length: 1018 |
SSR | | GCCAGAGTGAAATAAACTTAATTGTTTCAATTTTTTTCAACTTAGAATGATTACAAAGATAATGATACTATGCTCTAAATGTTTTG
CATTACAAAGTCCTCAATACAAAAAAAAAACGATTCTGCCAAAAGACTCGCCCTCTCTCTCACTGTCACACACACACACACTAGGC
CTTATTCACCCGAATCTTCTGTCCTTCCAGCAAAGAGTTGTTAAGAGCCAAAATAGCAGCATCGACATCTTCATCAGAAGAAAACG
TAACAAACCCAAACCCAGTAGATTTCGAAGTACCAGGCACTCTCGAAACCTTAGCACTCAAAACTTTCCCTTTCTCAGAAAACAAA
TTCTCAAGCATCTCTTTAGTAACACTCTTCGCTAGATTCCCTACATACACTTTGTAAGGACTATCCACAAATGCTGCATCTTCAGA
CTGAAGCAGCGACAAATCAGGAGACGATGATGATGATAATTCTATAGGCTTCTCTGTAATATTAACCTTCACCTCACGTCCTTCAA
TTGTAGTGCCGTTCAACTTCTCAATGACAGCATTGGCATCTTCAACTGATTTCATAGTAGCGAAACCAAACCTACGGCTTCTTCCT
GAGTACTTATCATACATCACCTGGACTTGTTCAACGGCGCCGTGTTCTTCGACGAGTTTGGTGAGCTGTTCGTTAGTTACGGTTCT
TGGTATGTTTCCGATGTAGACGCGTCTTGAGGATTCTGCGTTAGGGTCCAAAGCGGGTTTTTCTTCCGTCTCCAACGTTGCGCGAG
GGATGAGTCTCATCCTGGAGGTCCGTGGAAGAGATGGGTCTGGGGACAGAAGGAAAGGCTTTGGCTTTGAGAGCGAATGCATTGGT
TTGAGATTGCAAAGAGGTGGAGGACTCGGAGTGGAATGAGAAGTGTGTGGGTTTGATTGAAACAACAGCTGTTAGGAAAGTAGCCA
TTGTCGGAGGAAGGAAGGAAGGAGATAGTAATGGGGGAAAAGAGAAGAAGGTGTTGTGTTGTGTTGTGTTCC
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| NP_566958 RNA recognition motif-containing protein [Arabidopsis thaliana] | 914 | 3e-096 |
| BAH19693 AT3G52150 [Arabidopsis thaliana] | 909 | 1e-095 |
| XP_002876128 hypothetical protein ARALYDRAFT_348313 [Arabidopsis lyrata subsp. lyrata] | 861 | 4e-090 |
| CAB41335 putative protein [Arabidopsis thaliana] | 856 | 1e-089 |
| XP_002513193 ribonucleoprotein, chloroplast, putative [Ricinus communis] | 730 | 6e-075 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| P82277 30S ribosomal protein 2, chloroplastic | 675 | 6e-070 |
| Q08935 29 kDa ribonucleoprotein A, chloroplastic | 354 | 1e-032 |
| P49313 30 kDa ribonucleoprotein, chloroplastic | 346 | 8e-032 |
| P19684 33 kDa ribonucleoprotein, chloroplastic | 340 | 4e-031 |
| Q04836 31 kDa ribonucleoprotein, chloroplastic | 207 | 1e-015 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q8VYM4 Putative uncharacterized protein At3g52150 | 914 | 2e-096 |
| B9DG26 AT3G52150 protein | 909 | 7e-096 |
| Q9SUZ0 Putative uncharacterized protein F4F15.260 | 856 | 1e-089 |
| B9RHH4 Ribonucleoprotein, chloroplast, putative | 730 | 4e-075 |
| B9HNK5 Predicted protein | 718 | 1e-073 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT3G52150.1 RNA recognition motif (RRM)-containing protein | 915 | 8e-099 |
| AT3G52150.2 RNA recognition motif (RRM)-containing protein | 915 | 8e-099 |
| AT3G52380.1 CP33; RNA binding | 365 | 5e-035 |
| AT4G24770.1 RBP31 (31-KDA RNA BINDING PROTEIN); RNA binding / poly(U) binding | 207 | 1e-016 |
| AT2G37220.1 29 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein cp29, putative | 191 | 7e-015 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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