RadishBase

| | | |

Information for unigene UN51573

FASTA Sequence

Unigene ID: UN51573	Length: 1495		SNP
GGAGAAAACACAAATACGCAGAGAAAGGAAGGAGCCCCTGAGGGAGAGAAGTGAGAAGTAACGCAAAGATTCAAAAGAGAACCAGA CTTCTCTCACTGTTTCATCTTCTCAAATCACCTTTTAGCTCCCGATTCGTTTCTCACTCTTCTGGGCCGTTAACCACAAGTAAACA GAGGCTGGAGCTGGGGAAGAAAAGGATTGTCTATGGAGGGAGACGGCGTAAAAGGTTTGGGATGCCAGAAGACTATGGATGGGAAG GCGAGTAACGGGAACAAGGCTGTACCTTCTTGTTGCCTCAAGGCCATGGCTTGCTTACCTGAGGAAGATGCTAAGTGCCACTCCAC TGTTGTTTCTGGATGGTTCTCCGAACCTCACTCTCGCTCTGGGAAAAAAGGGGAAGCTGTCTATTTCAATAACCCTATGTGGCCTG GTGAAGCACACTCACTGAAAGTTGAGAAAGTTCTGTTTAAGGACAAGTCAGAGTATCAGGAAGTCCTAGTGTTTGAGTCAGCTACC TACGGGAAAGTGCTTGTTCTAGATGGTATTGTACAGCTGACTGAAAAAGACGAATTCGCATATCAGGAGATGATAGCACATCTGCC TCTTTGCTCTACACCTTCTCCTAAAAATGTTCTAGTTGTTGGGGGAGGTGACGGTGGTGTTCTCAGGGAGATTTCTCGCCATAGCT CTGTTGAGGTTATTGACATTTGCGAGATAGACAAGATGGTTATAGATGTGTCTAAGAAGTTCTTCCCCGAGTTAGCTGTTGGATTT GAAGACCCTCGTGTTCAACTTCACATTGGTGATGCTGTTGAGTTCCTTCGTAAGTCCCCTGCAGGGAAGTATGACGCCATTATTGT CGATTCTTCAGATCCTGTTGGTCCTGCTCAGGCGCTTGTTGAGAAGCCTTTCTTTGAAACGTTAGCTAGAGCGTTGAAGCCTGGTG GTATTCTTTGCAACATGGCGGAAAGTATGTGGCTCCATACTCATCTTATCGAAGACATGATCTCCATTTGCCGCCAGACATTCAAA AACGTTCAGTACGCCTGGAGCAGCGTCCCAACATATCCTAGCGGCGTGATTGGCTTTGTCTTGTGCTCTACCGAAGGACCTGCTGT TGATTTCAAGAACCCTATCAACCCTATTGAGAAACTAGACGGTGCCATGACCTATAAACGAGAAATGAAGTTTTATAACTCGGATA TGCACAGAGCAGCTTTCGCGTTACCCACATTCCTGCGGAGAGAAGTGGCATCACTTCTTGCTTCTTCTTGACGTCTCTTTGGCTTT GACTGTTTACTTTATCCCTCCCTCATATATAAAACTCTTAAGAGAAACTCTTCTTTATAAAGAGGAATGAAATAATTGAGAATCAG AGGAGAGGCTTTGTATCTCTGAACTCACTCCTTTATAATTAAAGACTAATAATTTTTATATATTGGCTTTTCATGAATTGTTTTTG TTTTTTATAAGTTCAATCAATCATATACATTAT

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
NP_568785 Spermine synthase [Arabidopsis thaliana]	1717	4e-189
BAH19534 AT5G53120 [Arabidopsis thaliana]	1713	1e-188
AAL11565 AT5g53120/MFH8_5 [Arabidopsis thaliana]	1712	1e-188
XP_002864224 hypothetical protein ARALYDRAFT_495379 [Arabidopsis lyrata subsp. lyrata]	1699	4e-187
AAM64782 spermidine synthase [Arabidopsis thaliana]	1672	6e-184

Swiss-Prot top hits (Blast detail)	Score	e value
O82147 Spermidine synthase	1116	7e-121
O48659 Spermidine synthase 2	1114	1e-120
Q96556 Spermidine synthase 1	1104	2e-119
Q9ZTR1 Spermidine synthase 1	1102	3e-119
O48658 Spermidine synthase 1	1099	7e-119

TrEMBL top hits (Blast detail)	Score	e value
Q94BN2 Putative spermidine synthase	1717	2e-189
B9DFL7 AT5G53120 protein	1713	7e-189
Q944S0 AT5g53120/MFH8_5	1712	9e-189
Q8LBG3 Spermidine synthase	1672	4e-184
Q4ADY5 Spermine synthase	1498	6e-164

Arabidopsis top hits (Blast detail)	Score	e value
AT5G53120.1 SPDS3 (SPERMIDINE SYNTHASE 3); spermidine synthase/ spermine synthase	1717	1e-191
AT5G53120.2 SPDS3 (SPERMIDINE SYNTHASE 3); spermidine synthase/ spermine synthase	1717	1e-191
AT5G53120.3 SPDS3 (SPERMIDINE SYNTHASE 3); spermidine synthase/ spermine synthase	1717	1e-191
AT5G53120.4 SPDS3 (SPERMIDINE SYNTHASE 3); spermidine synthase/ spermine synthase	1717	1e-191
AT5G53120.5 SPDS3 (SPERMIDINE SYNTHASE 3); spermidine synthase/ spermine synthase	1717	1e-191

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


8	9			64%


6	3			21%


11	2			14%

Unigene Members	Member information