 |
Information for unigene UN51592
| FASTA Sequence |
| Unigene ID: UN51592 | Length: 1329 |
SSR | | GGAATCAGCTTCTTCTTCTTCTTCATCGGTTTTGCTCAATTGGAGATGGCGACTTCGATGGTCTCTCCTCTTACTTCCCAGCTCAA
CCATGAATCTGTATTTTCCAAGTCCGTGCTTCCCAAATCACCGTTCATGTCGGGATCTAAGCTCTTCTCCTCGAACATGCCTTGCT
CTACTGTTCCTCGACGCACAAGAAGATCGAACTGCTTCGCTTCTGCTAAAGATATGAGCTTTGACCACATCCCCAAACAGTTCCGT
GGAGACAATCTCAAAGATGGAGTGATGCAGAACTTCAAGAATGTACCACAATATTTCTACGGTCTTAATCCAGCTCAAATGGATAT
GTTCATGACTGAGGACAGCCCTGTCCGTAGGCAAGCAGAGAAAGTTACAGAGGAAAGCATCTCGTCTAGAAGTAATTATCTAGACA
ACGGAGGAGCATGGAGTATGTCTGGTATGAATGCAGCAGATCCTAGGAGATACAGCATGAGTGTCCAAATGTACAGAGGTGGTGGA
GGCGGCGGAGGAGGATCTGCAAGACCAAGAACTGCTCCTCCAGATTTGCCTTCTTTGCTCTTGGATGCTCGGATTTGCTACCTTGG
CATGCCTATCGTACCTGCAGTAACTGAGTTACTCGTTGCTCAGTTTATGTGGTTAGACTATGACAACTCAGCCAAGCCCATCTACC
TATACATAAATTCACCAGGGACTCAGAATGAGAAGACGGAGACTGTTGGGTCAGAAACAGAGGCTTATGCCATAGCTGACACCATT
TCTTATTGCAAATCAGATGTATACACTATCAACTGTGGCATGGCTTTTGGTCAAGCAGCAATGCTTCTTTCTCTCGGTAAAAAGGG
TTACCGTGCAGTTCAGCCACATTCATCAACAAAATTGTATCTGCCAAAAGTAAACAGATCTAGCGGAGCTGCCATCGACATGTGGA
TAAAGGCCAAGGAGCTTGATGCAAATACTGAGTACTACATCGAGCTGTTAGCTAAGGGAGCAGGCAAAACCAAAGAGCAGATCAAC
GAGGACATCAAGCGACCTAAATATCTCCAAGCACAAGCAGCCATTGACTATGGAATTGCCGACAAGATAGCTAACTCGCAGGATAG
TTCCTTCGAGAAACGGGATTATGATGGGTCTCTTGCCCAAAGAGCCATGGGAAGACCTGGAGGAGGCAGTCCAACATCTCCAGCAG
GACTAAGATGATCAATCAAAAAAAATACAGAGTTTGAATCTCAATTTGCCTAGTCACTCTTGAATATGTAGCTGTTACAATCTGTA
AGCAAACACAAAGATAAAAGAAACATACAAAAGTCCTCC
|
|
|
| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002894225 hypothetical protein ARALYDRAFT_891918 [Arabidopsis lyrata subsp. lyrata] | 1894 | 9e-210 |
| NP_564560 ATP-dependent Clp protease proteolytic subunit-related protein 1 [Arabidopsis thaliana] | 1883 | 2e-208 |
| XP_002264383 PREDICTED: hypothetical protein [Vitis vinifera] | 1335 | 6e-145 |
| ACU20022 unknown [Glycine max] | 1312 | 3e-142 |
| XP_002313173 predicted protein [Populus trichocarpa] | 1308 | 8e-142 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q9XJ35 ATP-dependent Clp protease proteolytic subunit-related protein 1, chloroplastic | 1883 | 7e-210 |
| Q8L770 ATP-dependent Clp protease proteolytic subunit-related protein 3, chloroplastic | 449 | 1e-043 |
| Q8LB10 ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic | 409 | 6e-039 |
| Q7NEW1 ATP-dependent Clp protease proteolytic subunit 2 | 365 | 8e-034 |
| P74466 Putative ATP-dependent Clp protease proteolytic subunit-like | 343 | 3e-031 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| C6TDX0 ATP-dependent Clp protease proteolytic subunit (Fragment) | 1320 | 2e-143 |
| B9HMY7 ATP-dependent Clp protease proteolytic subunit | 1309 | 4e-142 |
| B9SND4 ATP-dependent Clp protease proteolytic subunit | 1201 | 1e-129 |
| B8LL17 ATP-dependent Clp protease proteolytic subunit | 1149 | 1e-123 |
| B8LS00 ATP-dependent Clp protease proteolytic subunit | 1142 | 1e-122 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT1G49970.1 CLPR1; serine-type endopeptidase | 1889 | 1e-211 |
| AT1G09130.1 ATP-dependent Clp protease proteolytic subunit, putative | 449 | 1e-044 |
| AT1G09130.2 ATP-dependent Clp protease proteolytic subunit, putative | 449 | 1e-044 |
| AT4G17040.1 ATP-dependent Clp protease proteolytic subunit, putative | 409 | 5e-040 |
| AT1G12410.1 CLP2 (CLP PROTEASE PROTEOLYTIC SUBUNIT 2); serine-type endopeptidase | 187 | 3e-014 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
|
|
|
|
