RadishBase

| | | |

Information for unigene UN51757

FASTA Sequence

Unigene ID: UN51757	Length: 754		SNP
CTCACACAGAAACGCAAAAACACAATGACTAACGTTGCAGTAATAGCCGCTATTCTGATTGCAGCATTGTTATCAGCTAGCGTGAC AGAACAAATGGCTCCATCTCCTTCCTCAGGACCTTCGGTTGAACCAGACTGCATGACGAATCTGTTGAACATGACGGACTGTCTTT CGTACGTGCAGGTAGGAAACCGTGGTGGTGCGGCCAATCCAGACAAATCTTGTTGTCCGGAGCTTGCCGGCCTTGTCGATAACTCG CCACAATGCCTCTGCTACCTACTCGGCGGAGATATGGAGGTTCAGTATGGAATCAAGATTGATAAGGCAAAGGCTCTCAAGCTTCC CGGAGTTTGTGGCGTCGTTACTCCAGATCCCTCACTATGTTCACTGTTTGGAATTCCAGTTGGAGCACCGGAAGCTATGGGCAACG AGGAATCCTCCCCAGCCTTCGCTCCAACTTCAGGTGCTGAATCACCAGAAGGCTTAGCATCGGGTCCATCGGCTAGCAGGATGAGC GATGCACGAAACACTGCACCTTATTCTCTTTTTCTCAGTATCTTCTGCATTTCATCTATAATCCTGATTTCCTTTTCTTTTTAGCG ACTCCATTATTTGTATTGTATTTTCCTATAAAAGAAGTATTGTTGCTTTTGGTAGGTTATTTTCCTGAATTTAATACTTTGTATTT TATGGATTATTTCATCATTCATCTTACTAAATAAAGATTGTCATCTTAAAATTAAAAAGAAAAAAA

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
NP_001030803 bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin-like protein [Arabidopsis thaliana]	679	3e-069
NP_189958 bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin-like protein [Arabidopsis thaliana]	679	3e-069
AAM66942 lipid-transfer protein-like protein [Arabidopsis thaliana]	673	1e-068
BAH56934 AT3G43720 [Arabidopsis thaliana]	662	3e-067
XP_002877294 lipid binding protein [Arabidopsis lyrata subsp. lyrata]	645	2e-065

Swiss-Prot top hits (Blast detail)	Score	e value
Q9ZVC7 Xylogen-like protein 11	308	1e-027
Q9ZQI8 Non-specific lipid-transfer protein-like protein At2g13820	166	4e-011
Q8VYI9 Non-specific lipid-transfer protein-like protein At5g64080	161	1e-010

TrEMBL top hits (Blast detail)	Score	e value
Q2V3R4 Putative uncharacterized protein At3g43720.2	679	2e-069
Q9LZH5 Lipid-transfer-like protein	679	2e-069
Q8L962 Lipid-transfer protein-like protein	673	9e-069
C0Z2K5 AT3G43720 protein	662	2e-067
C6SY96 Putative uncharacterized protein	338	7e-030

Arabidopsis top hits (Blast detail)	Score	e value
AT3G43720.1 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	679	1e-071
AT3G43720.2 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	679	1e-071
AT2G27130.1 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	308	1e-028
AT1G03103.1 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	217	4e-018
AT2G48130.1 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	197	9e-016

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


11	8			21%


7	8			21%


6	3			8%


8	5			13%


10	3			8%


12	8			21%


19	1			3%


9	2			5%

Unigene Members	Member information